## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Li1-CRR995109.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Li1-CRR995109.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Li1-CRR995109.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14277264	0	0	2211952	1740237	0.154928	162395949

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.132806
2.0	2.170272
3.0	3.120422
4.0	3.990605
5.0	4.787552
6.0	5.517425
7.0	6.18587
8.0	6.798058
9.0	7.358722
10.0	7.872199
11.0	8.34246
12.0	8.773144
13.0	9.167579
14.0	9.528818
15.0	9.859655
16.0	10.162647
17.0	10.440139
18.0	10.694276
19.0	10.927024
20.0	11.140184
21.0	11.335404
22.0	11.514193
23.0	11.677935
24.0	11.827896
25.0	11.965236
26.0	12.091017
27.0	12.206213
28.0	12.311712
29.0	12.408333
30.0	12.496822
31.0	12.577864
32.0	12.652085
33.0	12.720059
34.0	12.782312
35.0	12.839326
36.0	12.891542
37.0	12.939363
38.0	12.983159
39.0	13.023269
40.0	13.060003
41.0	13.093646
42.0	13.124457
43.0	13.152676
44.0	13.178519
45.0	13.202187
46.0	13.223863
47.0	13.243715
48.0	13.261896
49.0	13.278547
50.0	13.293797
51.0	13.307763
52.0	13.320554
53.0	13.332268
54.0	13.342996
55.0	13.352821
56.0	13.36182
57.0	13.370061
58.0	13.377608
59.0	13.384521
60.0	13.390851
61.0	13.396649
62.0	13.401959
63.0	13.406822
64.0	13.411275
65.0	13.415354
66.0	13.41909
67.0	13.422511
68.0	13.425644
69.0	13.428514
70.0	13.431142
71.0	13.433548
72.0	13.435753
73.0	13.437771
74.0	13.43962
75.0	13.441313
76.0	13.442864
77.0	13.444284
78.0	13.445585
79.0	13.446776
80.0	13.447867
81.0	13.448866
82.0	13.449781
83.0	13.45062
84.0	13.451387
85.0	13.45209
86.0	13.452734
87.0	13.453323
88.0	13.453863
89.0	13.454358
90.0	13.454811
91.0	13.455225
92.0	13.455605
93.0	13.455953
94.0	13.456272
95.0	13.456564
96.0	13.456831
97.0	13.457076
98.0	13.4573
99.0	13.457505
100.0	13.457693