## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Br2-CRR995107.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Br2-CRR995107.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Br2-CRR995107.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18730859	0	0	5800476	3466332	0.309675	44682827

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.183298
2.0	1.961406
3.0	2.473071
4.0	2.809529
5.0	3.030775
6.0	3.176262
7.0	3.27193
8.0	3.334839
9.0	3.376206
10.0	3.403408
11.0	3.421296
12.0	3.433058
13.0	3.440793
14.0	3.445879
15.0	3.449223
16.0	3.451423
17.0	3.452869
18.0	3.45382
19.0	3.454445
20.0	3.454856
21.0	3.455127
22.0	3.455305
23.0	3.455422
24.0	3.455498
25.0	3.455549
26.0	3.455582
27.0	3.455604
28.0	3.455618
29.0	3.455628
30.0	3.455634
31.0	3.455638
32.0	3.455641
33.0	3.455643
34.0	3.455644
35.0	3.455645
36.0	3.455645
37.0	3.455645
38.0	3.455646
39.0	3.455646
40.0	3.455646
41.0	3.455646
42.0	3.455646
43.0	3.455646
44.0	3.455646
45.0	3.455646
46.0	3.455646
47.0	3.455646
48.0	3.455646
49.0	3.455646
50.0	3.455646
51.0	3.455646
52.0	3.455646
53.0	3.455646
54.0	3.455646
55.0	3.455646
56.0	3.455646
57.0	3.455646
58.0	3.455646
59.0	3.455646
60.0	3.455646
61.0	3.455646
62.0	3.455646
63.0	3.455646
64.0	3.455646
65.0	3.455646
66.0	3.455646
67.0	3.455646
68.0	3.455646
69.0	3.455646
70.0	3.455646
71.0	3.455646
72.0	3.455646
73.0	3.455646
74.0	3.455646
75.0	3.455646
76.0	3.455646
77.0	3.455646
78.0	3.455646
79.0	3.455646
80.0	3.455646
81.0	3.455646
82.0	3.455646
83.0	3.455646
84.0	3.455646
85.0	3.455646
86.0	3.455646
87.0	3.455646
88.0	3.455646
89.0	3.455646
90.0	3.455646
91.0	3.455646
92.0	3.455646
93.0	3.455646
94.0	3.455646
95.0	3.455646
96.0	3.455646
97.0	3.455646
98.0	3.455646
99.0	3.455646
100.0	3.455646