## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Pl3-CRR995105.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Pl3-CRR995105.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Pl3-CRR995105.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:49 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15692846	0	0	3696242	2893230	0.235537	97697080

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.208455
2.0	2.237586
3.0	3.114003
4.0	3.860368
5.0	4.495979
6.0	5.037272
7.0	5.498242
8.0	5.890807
9.0	6.22512
10.0	6.509824
11.0	6.75228
12.0	6.958758
13.0	7.134597
14.0	7.284343
15.0	7.411868
16.0	7.520469
17.0	7.612955
18.0	7.691717
19.0	7.758791
20.0	7.815912
21.0	7.864557
22.0	7.905984
23.0	7.941263
24.0	7.971307
25.0	7.996892
26.0	8.018681
27.0	8.037237
28.0	8.053039
29.0	8.066497
30.0	8.077957
31.0	8.087717
32.0	8.096029
33.0	8.103107
34.0	8.109135
35.0	8.114268
36.0	8.118639
37.0	8.122362
38.0	8.125533
39.0	8.128233
40.0	8.130532
41.0	8.13249
42.0	8.134158
43.0	8.135578
44.0	8.136787
45.0	8.137817
46.0	8.138694
47.0	8.139441
48.0	8.140077
49.0	8.140619
50.0	8.14108
51.0	8.141473
52.0	8.141808
53.0	8.142093
54.0	8.142335
55.0	8.142542
56.0	8.142718
57.0	8.142868
58.0	8.142996
59.0	8.143104
60.0	8.143197
61.0	8.143276
62.0	8.143343
63.0	8.1434
64.0	8.143449
65.0	8.14349
66.0	8.143525
67.0	8.143555
68.0	8.143581
69.0	8.143603
70.0	8.143621
71.0	8.143637
72.0	8.143651
73.0	8.143662
74.0	8.143672
75.0	8.14368
76.0	8.143687
77.0	8.143693
78.0	8.143699
79.0	8.143703
80.0	8.143707
81.0	8.14371
82.0	8.143713
83.0	8.143715
84.0	8.143717
85.0	8.143718
86.0	8.14372
87.0	8.143721
88.0	8.143722
89.0	8.143723
90.0	8.143724
91.0	8.143724
92.0	8.143725
93.0	8.143725
94.0	8.143726
95.0	8.143726
96.0	8.143726
97.0	8.143727
98.0	8.143727
99.0	8.143727
100.0	8.143727