## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Pl2-CRR995104.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Pl2-CRR995104.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Pl2-CRR995104.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20469699	0	0	2352367	1687197	0.114919	258883617

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.086327
2.0	2.090068
3.0	3.0175
4.0	3.874425
5.0	4.666203
6.0	5.397787
7.0	6.073754
8.0	6.69833
9.0	7.275424
10.0	7.808645
11.0	8.301328
12.0	8.756556
13.0	9.177175
14.0	9.565818
15.0	9.924914
16.0	10.25671
17.0	10.563282
18.0	10.846547
19.0	11.108277
20.0	11.350109
21.0	11.573557
22.0	11.780017
23.0	11.970781
24.0	12.147042
25.0	12.309903
26.0	12.460383
27.0	12.599423
28.0	12.727893
29.0	12.846595
30.0	12.956274
31.0	13.057614
32.0	13.15125
33.0	13.237768
34.0	13.317708
35.0	13.39157
36.0	13.459818
37.0	13.522877
38.0	13.581142
39.0	13.634977
40.0	13.68472
41.0	13.730681
42.0	13.773148
43.0	13.812386
44.0	13.848641
45.0	13.88214
46.0	13.913093
47.0	13.941692
48.0	13.968117
49.0	13.992533
50.0	14.015093
51.0	14.035937
52.0	14.055197
53.0	14.072993
54.0	14.089436
55.0	14.104629
56.0	14.118667
57.0	14.131638
58.0	14.143622
59.0	14.154696
60.0	14.164927
61.0	14.174381
62.0	14.183116
63.0	14.191187
64.0	14.198644
65.0	14.205535
66.0	14.211901
67.0	14.217784
68.0	14.223219
69.0	14.228241
70.0	14.232882
71.0	14.237169
72.0	14.241131
73.0	14.244791
74.0	14.248173
75.0	14.251298
76.0	14.254186
77.0	14.256854
78.0	14.259319
79.0	14.261597
80.0	14.263701
81.0	14.265646
82.0	14.267442
83.0	14.269103
84.0	14.270637
85.0	14.272054
86.0	14.273363
87.0	14.274573
88.0	14.275691
89.0	14.276724
90.0	14.277679
91.0	14.278561
92.0	14.279376
93.0	14.280129
94.0	14.280824
95.0	14.281467
96.0	14.282061
97.0	14.28261
98.0	14.283117
99.0	14.283585
100.0	14.284018