## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Pl1-CRR995103.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Pl1-CRR995103.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Pl1-CRR995103.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18344806	0	0	4641522	3458974	0.253016	88660327

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.209296
2.0	2.192565
3.0	2.992054
4.0	3.642111
5.0	4.170667
6.0	4.600432
7.0	4.949871
8.0	5.233996
9.0	5.465016
10.0	5.652857
11.0	5.805589
12.0	5.929774
13.0	6.030747
14.0	6.112848
15.0	6.179604
16.0	6.233882
17.0	6.278016
18.0	6.3139
19.0	6.343078
20.0	6.366802
21.0	6.386091
22.0	6.401776
23.0	6.414528
24.0	6.424898
25.0	6.433329
26.0	6.440184
27.0	6.445758
28.0	6.45029
29.0	6.453975
30.0	6.456971
31.0	6.459408
32.0	6.461388
33.0	6.462999
34.0	6.464309
35.0	6.465374
36.0	6.466239
37.0	6.466943
38.0	6.467516
39.0	6.467981
40.0	6.46836
41.0	6.468667
42.0	6.468917
43.0	6.469121
44.0	6.469286
45.0	6.469421
46.0	6.46953
47.0	6.469619
48.0	6.469691
49.0	6.46975
50.0	6.469798
51.0	6.469837
52.0	6.469868
53.0	6.469894
54.0	6.469915
55.0	6.469932
56.0	6.469946
57.0	6.469957
58.0	6.469966
59.0	6.469974
60.0	6.46998
61.0	6.469984
62.0	6.469988
63.0	6.469992
64.0	6.469994
65.0	6.469996
66.0	6.469998
67.0	6.47
68.0	6.470001
69.0	6.470002
70.0	6.470002
71.0	6.470003
72.0	6.470004
73.0	6.470004
74.0	6.470004
75.0	6.470005
76.0	6.470005
77.0	6.470005
78.0	6.470005
79.0	6.470005
80.0	6.470005
81.0	6.470005
82.0	6.470006
83.0	6.470006
84.0	6.470006
85.0	6.470006
86.0	6.470006
87.0	6.470006
88.0	6.470006
89.0	6.470006
90.0	6.470006
91.0	6.470006
92.0	6.470006
93.0	6.470006
94.0	6.470006
95.0	6.470006
96.0	6.470006
97.0	6.470006
98.0	6.470006
99.0	6.470006
100.0	6.470006