## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Mu3-CRR995102.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Mu3-CRR995102.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Mu3-CRR995102.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:50 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	21107117	0	0	2320118	1626843	0.109921	267154574

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.08026
2.0	2.078456
3.0	3.000823
4.0	3.85312
5.0	4.640671
6.0	5.368395
7.0	6.040836
8.0	6.662194
9.0	7.236349
10.0	7.766888
11.0	8.257123
12.0	8.710117
13.0	9.128698
14.0	9.515481
15.0	9.872882
16.0	10.203132
17.0	10.508294
18.0	10.790274
19.0	11.050833
20.0	11.291598
21.0	11.514073
22.0	11.719647
23.0	11.909604
24.0	12.085131
25.0	12.247324
26.0	12.397196
27.0	12.535682
28.0	12.663648
29.0	12.781893
30.0	12.891155
31.0	12.992117
32.0	13.085409
33.0	13.171614
34.0	13.25127
35.0	13.324875
36.0	13.392889
37.0	13.455736
38.0	13.513808
39.0	13.567469
40.0	13.617054
41.0	13.662872
42.0	13.705209
43.0	13.74433
44.0	13.780479
45.0	13.813882
46.0	13.844747
47.0	13.873268
48.0	13.899622
49.0	13.923974
50.0	13.946476
51.0	13.967268
52.0	13.986482
53.0	14.004235
54.0	14.02064
55.0	14.035799
56.0	14.049806
57.0	14.062749
58.0	14.074709
59.0	14.08576
60.0	14.095972
61.0	14.105408
62.0	14.114127
63.0	14.122183
64.0	14.129628
65.0	14.136507
66.0	14.142864
67.0	14.148738
68.0	14.154165
69.0	14.15918
70.0	14.163815
71.0	14.168097
72.0	14.172054
73.0	14.17571
74.0	14.179088
75.0	14.18221
76.0	14.185095
77.0	14.187761
78.0	14.190224
79.0	14.1925
80.0	14.194603
81.0	14.196546
82.0	14.198342
83.0	14.200001
84.0	14.201534
85.0	14.202951
86.0	14.20426
87.0	14.20547
88.0	14.206587
89.0	14.20762
90.0	14.208575
91.0	14.209456
92.0	14.210271
93.0	14.211024
94.0	14.21172
95.0	14.212363
96.0	14.212957
97.0	14.213506
98.0	14.214013
99.0	14.214482
100.0	14.214915