## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Mu2-CRR995101.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Mu2-CRR995101.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Mu2-CRR995101.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20825206	0	0	1806107	1372743	0.086727	430074025

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.068875
2.0	2.087226
3.0	3.057441
4.0	3.981795
5.0	4.862456
6.0	5.701489
7.0	6.500862
8.0	7.26245
9.0	7.988039
10.0	8.67933
11.0	9.337944
12.0	9.965427
13.0	10.563249
14.0	11.132813
15.0	11.675455
16.0	12.192446
17.0	12.685
18.0	13.154272
19.0	13.601362
20.0	14.027318
21.0	14.43314
22.0	14.819779
23.0	15.188143
24.0	15.539094
25.0	15.873457
26.0	16.192014
27.0	16.495514
28.0	16.784667
29.0	17.060153
30.0	17.322617
31.0	17.572674
32.0	17.810912
33.0	18.037888
34.0	18.254136
35.0	18.460162
36.0	18.656449
37.0	18.843458
38.0	19.021627
39.0	19.191375
40.0	19.353098
41.0	19.507178
42.0	19.653974
43.0	19.793831
44.0	19.927077
45.0	20.054025
46.0	20.174973
47.0	20.290203
48.0	20.399987
49.0	20.504581
50.0	20.604231
51.0	20.699171
52.0	20.789623
53.0	20.8758
54.0	20.957903
55.0	21.036125
56.0	21.11065
57.0	21.181652
58.0	21.249298
59.0	21.313746
60.0	21.375148
61.0	21.433648
62.0	21.489382
63.0	21.542482
64.0	21.593072
65.0	21.64127
66.0	21.687191
67.0	21.73094
68.0	21.772622
69.0	21.812334
70.0	21.850168
71.0	21.886214
72.0	21.920556
73.0	21.953275
74.0	21.984447
75.0	22.014146
76.0	22.042441
77.0	22.069399
78.0	22.095082
79.0	22.119551
80.0	22.142864
81.0	22.165074
82.0	22.186235
83.0	22.206396
84.0	22.225603
85.0	22.243903
86.0	22.261338
87.0	22.277948
88.0	22.293774
89.0	22.308851
90.0	22.323216
91.0	22.336901
92.0	22.34994
93.0	22.362362
94.0	22.374198
95.0	22.385473
96.0	22.396216
97.0	22.406451
98.0	22.416202
99.0	22.425493
100.0	22.434344