## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Mu1-CRR995100.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Mu1-CRR995100.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Mu1-CRR995100.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20043843	0	0	5574438	4643337	0.278112	122176005

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.277594
2.0	2.361879
3.0	3.282105
4.0	4.063095
5.0	4.725916
6.0	5.288448
7.0	5.765865
8.0	6.171046
9.0	6.51492
10.0	6.806764
11.0	7.054451
12.0	7.26466
13.0	7.443064
14.0	7.594474
15.0	7.722974
16.0	7.832032
17.0	7.924588
18.0	8.003141
19.0	8.069807
20.0	8.126387
21.0	8.174406
22.0	8.215159
23.0	8.249746
24.0	8.2791
25.0	8.304012
26.0	8.325155
27.0	8.343099
28.0	8.358328
29.0	8.371252
30.0	8.382221
31.0	8.391531
32.0	8.399431
33.0	8.406137
34.0	8.411827
35.0	8.416657
36.0	8.420756
37.0	8.424235
38.0	8.427187
39.0	8.429693
40.0	8.43182
41.0	8.433624
42.0	8.435156
43.0	8.436456
44.0	8.437559
45.0	8.438496
46.0	8.43929
47.0	8.439965
48.0	8.440537
49.0	8.441023
50.0	8.441435
51.0	8.441785
52.0	8.442082
53.0	8.442334
54.0	8.442548
55.0	8.442729
56.0	8.442884
57.0	8.443014
58.0	8.443125
59.0	8.443219
60.0	8.443299
61.0	8.443367
62.0	8.443425
63.0	8.443474
64.0	8.443515
65.0	8.44355
66.0	8.44358
67.0	8.443606
68.0	8.443627
69.0	8.443645
70.0	8.443661
71.0	8.443674
72.0	8.443685
73.0	8.443695
74.0	8.443703
75.0	8.443709
76.0	8.443715
77.0	8.44372
78.0	8.443724
79.0	8.443728
80.0	8.443731
81.0	8.443733
82.0	8.443736
83.0	8.443737
84.0	8.443739
85.0	8.44374
86.0	8.443741
87.0	8.443742
88.0	8.443743
89.0	8.443744
90.0	8.443744
91.0	8.443745
92.0	8.443745
93.0	8.443746
94.0	8.443746
95.0	8.443746
96.0	8.443746
97.0	8.443747
98.0	8.443747
99.0	8.443747
100.0	8.443747