## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Li3-CRR995099.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Li3-CRR995099.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Li3-CRR995099.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:13 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	30800637	0	0	8622587	5300288	0.279948	89165382

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.174312
2.0	2.005625
3.0	2.594122
4.0	3.010728
5.0	3.305649
6.0	3.514428
7.0	3.662225
8.0	3.766853
9.0	3.84092
10.0	3.893354
11.0	3.930472
12.0	3.956749
13.0	3.97535
14.0	3.988518
15.0	3.99784
16.0	4.00444
17.0	4.009111
18.0	4.012418
19.0	4.01476
20.0	4.016417
21.0	4.01759
22.0	4.018421
23.0	4.019009
24.0	4.019425
25.0	4.01972
26.0	4.019928
27.0	4.020076
28.0	4.02018
29.0	4.020254
30.0	4.020307
31.0	4.020344
32.0	4.02037
33.0	4.020389
34.0	4.020402
35.0	4.020411
36.0	4.020418
37.0	4.020422
38.0	4.020426
39.0	4.020428
40.0	4.02043
41.0	4.020431
42.0	4.020432
43.0	4.020432
44.0	4.020433
45.0	4.020433
46.0	4.020433
47.0	4.020433
48.0	4.020434
49.0	4.020434
50.0	4.020434
51.0	4.020434
52.0	4.020434
53.0	4.020434
54.0	4.020434
55.0	4.020434
56.0	4.020434
57.0	4.020434
58.0	4.020434
59.0	4.020434
60.0	4.020434
61.0	4.020434
62.0	4.020434
63.0	4.020434
64.0	4.020434
65.0	4.020434
66.0	4.020434
67.0	4.020434
68.0	4.020434
69.0	4.020434
70.0	4.020434
71.0	4.020434
72.0	4.020434
73.0	4.020434
74.0	4.020434
75.0	4.020434
76.0	4.020434
77.0	4.020434
78.0	4.020434
79.0	4.020434
80.0	4.020434
81.0	4.020434
82.0	4.020434
83.0	4.020434
84.0	4.020434
85.0	4.020434
86.0	4.020434
87.0	4.020434
88.0	4.020434
89.0	4.020434
90.0	4.020434
91.0	4.020434
92.0	4.020434
93.0	4.020434
94.0	4.020434
95.0	4.020434
96.0	4.020434
97.0	4.020434
98.0	4.020434
99.0	4.020434
100.0	4.020434