## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Li2-CRR995098.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Li2-CRR995098.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Li2-CRR995098.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	26086212	0	0	5151993	2877696	0.197499	110548367

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.109995
2.0	1.986673
3.0	2.679076
4.0	3.225938
5.0	3.657852
6.0	3.99898
7.0	4.268403
8.0	4.481195
9.0	4.649258
10.0	4.781996
11.0	4.886832
12.0	4.969632
13.0	5.035028
14.0	5.086678
15.0	5.127471
16.0	5.159689
17.0	5.185136
18.0	5.205234
19.0	5.221107
20.0	5.233643
21.0	5.243545
22.0	5.251365
23.0	5.257542
24.0	5.26242
25.0	5.266273
26.0	5.269316
27.0	5.271719
28.0	5.273617
29.0	5.275116
30.0	5.2763
31.0	5.277236
32.0	5.277974
33.0	5.278558
34.0	5.279018
35.0	5.279382
36.0	5.27967
37.0	5.279897
38.0	5.280076
39.0	5.280217
40.0	5.280329
41.0	5.280418
42.0	5.280487
43.0	5.280543
44.0	5.280586
45.0	5.28062
46.0	5.280648
47.0	5.280669
48.0	5.280686
49.0	5.280699
50.0	5.28071
51.0	5.280718
52.0	5.280725
53.0	5.28073
54.0	5.280734
55.0	5.280737
56.0	5.28074
57.0	5.280742
58.0	5.280744
59.0	5.280745
60.0	5.280746
61.0	5.280747
62.0	5.280747
63.0	5.280748
64.0	5.280748
65.0	5.280748
66.0	5.280749
67.0	5.280749
68.0	5.280749
69.0	5.280749
70.0	5.280749
71.0	5.280749
72.0	5.280749
73.0	5.280749
74.0	5.280749
75.0	5.280749
76.0	5.280749
77.0	5.280749
78.0	5.280749
79.0	5.280749
80.0	5.280749
81.0	5.280749
82.0	5.28075
83.0	5.28075
84.0	5.28075
85.0	5.28075
86.0	5.28075
87.0	5.28075
88.0	5.28075
89.0	5.28075
90.0	5.28075
91.0	5.28075
92.0	5.28075
93.0	5.28075
94.0	5.28075
95.0	5.28075
96.0	5.28075
97.0	5.28075
98.0	5.28075
99.0	5.28075
100.0	5.28075