## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Li1-CRR995097.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Li1-CRR995097.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Li1-CRR995097.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20416232	0	0	11073497	7585682	0.542387	19094633

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.342204
2.0	1.802954
3.0	1.961119
4.0	2.015414
5.0	2.034052
6.0	2.04045
7.0	2.042647
8.0	2.043401
9.0	2.043659
10.0	2.043748
11.0	2.043779
12.0	2.043789
13.0	2.043793
14.0	2.043794
15.0	2.043795
16.0	2.043795
17.0	2.043795
18.0	2.043795
19.0	2.043795
20.0	2.043795
21.0	2.043795
22.0	2.043795
23.0	2.043795
24.0	2.043795
25.0	2.043795
26.0	2.043795
27.0	2.043795
28.0	2.043795
29.0	2.043795
30.0	2.043795
31.0	2.043795
32.0	2.043795
33.0	2.043795
34.0	2.043795
35.0	2.043795
36.0	2.043795
37.0	2.043795
38.0	2.043795
39.0	2.043795
40.0	2.043795
41.0	2.043795
42.0	2.043795
43.0	2.043795
44.0	2.043795
45.0	2.043795
46.0	2.043795
47.0	2.043795
48.0	2.043795
49.0	2.043795
50.0	2.043795
51.0	2.043795
52.0	2.043795
53.0	2.043795
54.0	2.043795
55.0	2.043795
56.0	2.043795
57.0	2.043795
58.0	2.043795
59.0	2.043795
60.0	2.043795
61.0	2.043795
62.0	2.043795
63.0	2.043795
64.0	2.043795
65.0	2.043795
66.0	2.043795
67.0	2.043795
68.0	2.043795
69.0	2.043795
70.0	2.043795
71.0	2.043795
72.0	2.043795
73.0	2.043795
74.0	2.043795
75.0	2.043795
76.0	2.043795
77.0	2.043795
78.0	2.043795
79.0	2.043795
80.0	2.043795
81.0	2.043795
82.0	2.043795
83.0	2.043795
84.0	2.043795
85.0	2.043795
86.0	2.043795
87.0	2.043795
88.0	2.043795
89.0	2.043795
90.0	2.043795
91.0	2.043795
92.0	2.043795
93.0	2.043795
94.0	2.043795
95.0	2.043795
96.0	2.043795
97.0	2.043795
98.0	2.043795
99.0	2.043795
100.0	2.043795