## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Br3-CRR995096.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Br3-CRR995096.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Br3-CRR995096.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17830812	0	0	5228274	4346631	0.293216	98570584

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.294269
2.0	2.374367
3.0	3.275735
4.0	4.027948
5.0	4.655688
6.0	5.179552
7.0	5.616729
8.0	5.981563
9.0	6.286027
10.0	6.540109
11.0	6.752146
12.0	6.929096
13.0	7.076766
14.0	7.199999
15.0	7.30284
16.0	7.388664
17.0	7.460286
18.0	7.520056
19.0	7.569935
20.0	7.611561
21.0	7.646299
22.0	7.675288
23.0	7.699481
24.0	7.71967
25.0	7.736518
26.0	7.750578
27.0	7.762312
28.0	7.772104
29.0	7.780276
30.0	7.787095
31.0	7.792786
32.0	7.797535
33.0	7.801499
34.0	7.804806
35.0	7.807566
36.0	7.80987
37.0	7.811792
38.0	7.813396
39.0	7.814735
40.0	7.815852
41.0	7.816785
42.0	7.817563
43.0	7.818212
44.0	7.818754
45.0	7.819206
46.0	7.819584
47.0	7.819899
48.0	7.820161
49.0	7.820381
50.0	7.820564
51.0	7.820716
52.0	7.820844
53.0	7.82095
54.0	7.821039
55.0	7.821113
56.0	7.821175
57.0	7.821227
58.0	7.82127
59.0	7.821306
60.0	7.821336
61.0	7.821361
62.0	7.821381
63.0	7.821399
64.0	7.821413
65.0	7.821426
66.0	7.821436
67.0	7.821444
68.0	7.821451
69.0	7.821457
70.0	7.821462
71.0	7.821466
72.0	7.821469
73.0	7.821472
74.0	7.821475
75.0	7.821477
76.0	7.821478
77.0	7.82148
78.0	7.821481
79.0	7.821482
80.0	7.821483
81.0	7.821483
82.0	7.821484
83.0	7.821484
84.0	7.821485
85.0	7.821485
86.0	7.821485
87.0	7.821486
88.0	7.821486
89.0	7.821486
90.0	7.821486
91.0	7.821486
92.0	7.821486
93.0	7.821486
94.0	7.821486
95.0	7.821486
96.0	7.821487
97.0	7.821487
98.0	7.821487
99.0	7.821487
100.0	7.821487