## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS40_Br2-CRR995095.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS40_Br2-CRR995095.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS40_Br2-CRR995095.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20608119	0	0	7567151	5880620	0.367193	59294299

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.334877
2.0	2.27785
3.0	2.943978
4.0	3.414539
5.0	3.746949
6.0	3.981767
7.0	4.147645
8.0	4.264824
9.0	4.3476
10.0	4.406074
11.0	4.447381
12.0	4.476561
13.0	4.497174
14.0	4.511735
15.0	4.522021
16.0	4.529288
17.0	4.534421
18.0	4.538047
19.0	4.540608
20.0	4.542418
21.0	4.543696
22.0	4.544599
23.0	4.545237
24.0	4.545687
25.0	4.546005
26.0	4.54623
27.0	4.546389
28.0	4.546501
29.0	4.546581
30.0	4.546637
31.0	4.546676
32.0	4.546704
33.0	4.546724
34.0	4.546738
35.0	4.546748
36.0	4.546755
37.0	4.546759
38.0	4.546763
39.0	4.546765
40.0	4.546767
41.0	4.546768
42.0	4.546769
43.0	4.54677
44.0	4.54677
45.0	4.546771
46.0	4.546771
47.0	4.546771
48.0	4.546771
49.0	4.546771
50.0	4.546771
51.0	4.546771
52.0	4.546771
53.0	4.546771
54.0	4.546771
55.0	4.546771
56.0	4.546771
57.0	4.546771
58.0	4.546771
59.0	4.546771
60.0	4.546771
61.0	4.546771
62.0	4.546771
63.0	4.546771
64.0	4.546771
65.0	4.546771
66.0	4.546771
67.0	4.546771
68.0	4.546771
69.0	4.546771
70.0	4.546771
71.0	4.546771
72.0	4.546771
73.0	4.546771
74.0	4.546771
75.0	4.546771
76.0	4.546771
77.0	4.546771
78.0	4.546771
79.0	4.546771
80.0	4.546771
81.0	4.546771
82.0	4.546771
83.0	4.546771
84.0	4.546771
85.0	4.546771
86.0	4.546771
87.0	4.546771
88.0	4.546771
89.0	4.546771
90.0	4.546771
91.0	4.546771
92.0	4.546771
93.0	4.546771
94.0	4.546771
95.0	4.546771
96.0	4.546771
97.0	4.546771
98.0	4.546771
99.0	4.546771
100.0	4.546771