## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS168_C_Li2-CRR995090.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS168_C_Li2-CRR995090.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS168_C_Li2-CRR995090.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:10 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13647734	0	0	1717485	947086	0.125844	100412413

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.069624
2.0	2.003316
3.0	2.818349
4.0	3.529805
5.0	4.150845
6.0	4.69296
7.0	5.166181
8.0	5.579263
9.0	5.939848
10.0	6.254608
11.0	6.529367
12.0	6.769209
13.0	6.97857
14.0	7.161325
15.0	7.320854
16.0	7.46011
17.0	7.581668
18.0	7.687778
19.0	7.780403
20.0	7.861257
21.0	7.931836
22.0	7.993445
23.0	8.047224
24.0	8.094169
25.0	8.135148
26.0	8.17092
27.0	8.202145
28.0	8.229402
29.0	8.253195
30.0	8.273964
31.0	8.292094
32.0	8.30792
33.0	8.321734
34.0	8.333793
35.0	8.34432
36.0	8.353508
37.0	8.361529
38.0	8.368531
39.0	8.374643
40.0	8.379978
41.0	8.384635
42.0	8.3887
43.0	8.392249
44.0	8.395346
45.0	8.39805
46.0	8.400411
47.0	8.402471
48.0	8.40427
49.0	8.40584
50.0	8.40721
51.0	8.408406
52.0	8.409451
53.0	8.410362
54.0	8.411158
55.0	8.411852
56.0	8.412459
57.0	8.412988
58.0	8.41345
59.0	8.413853
60.0	8.414205
61.0	8.414513
62.0	8.414781
63.0	8.415015
64.0	8.415219
65.0	8.415398
66.0	8.415554
67.0	8.41569
68.0	8.415808
69.0	8.415912
70.0	8.416002
71.0	8.416081
72.0	8.41615
73.0	8.41621
74.0	8.416263
75.0	8.416309
76.0	8.416349
77.0	8.416384
78.0	8.416414
79.0	8.416441
80.0	8.416464
81.0	8.416484
82.0	8.416502
83.0	8.416517
84.0	8.416531
85.0	8.416543
86.0	8.416553
87.0	8.416562
88.0	8.41657
89.0	8.416576
90.0	8.416582
91.0	8.416588
92.0	8.416592
93.0	8.416596
94.0	8.4166
95.0	8.416603
96.0	8.416605
97.0	8.416608
98.0	8.41661
99.0	8.416611
100.0	8.416613