## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS168_C_Br2-CRR995089.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS168_C_Br2-CRR995089.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS168_C_Br2-CRR995089.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:12 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18556556	0	0	6323174	5175443	0.340751	73476321

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.34049
2.0	2.381804
3.0	3.190714
4.0	3.819088
5.0	4.307219
6.0	4.686408
7.0	4.980967
8.0	5.209786
9.0	5.387536
10.0	5.525615
11.0	5.632877
12.0	5.7162
13.0	5.780927
14.0	5.831207
15.0	5.870266
16.0	5.900608
17.0	5.924178
18.0	5.942487
19.0	5.95671
20.0	5.967759
21.0	5.976341
22.0	5.983009
23.0	5.988188
24.0	5.992211
25.0	5.995337
26.0	5.997765
27.0	5.99965
28.0	6.001116
29.0	6.002254
30.0	6.003138
31.0	6.003824
32.0	6.004358
33.0	6.004772
34.0	6.005094
35.0	6.005344
36.0	6.005539
37.0	6.00569
38.0	6.005807
39.0	6.005898
40.0	6.005969
41.0	6.006024
42.0	6.006066
43.0	6.006099
44.0	6.006125
45.0	6.006145
46.0	6.006161
47.0	6.006173
48.0	6.006182
49.0	6.00619
50.0	6.006195
51.0	6.0062
52.0	6.006203
53.0	6.006206
54.0	6.006208
55.0	6.006209
56.0	6.006211
57.0	6.006212
58.0	6.006212
59.0	6.006213
60.0	6.006213
61.0	6.006214
62.0	6.006214
63.0	6.006214
64.0	6.006214
65.0	6.006214
66.0	6.006215
67.0	6.006215
68.0	6.006215
69.0	6.006215
70.0	6.006215
71.0	6.006215
72.0	6.006215
73.0	6.006215
74.0	6.006215
75.0	6.006215
76.0	6.006215
77.0	6.006215
78.0	6.006215
79.0	6.006215
80.0	6.006215
81.0	6.006215
82.0	6.006215
83.0	6.006215
84.0	6.006215
85.0	6.006215
86.0	6.006215
87.0	6.006215
88.0	6.006215
89.0	6.006215
90.0	6.006215
91.0	6.006215
92.0	6.006215
93.0	6.006215
94.0	6.006215
95.0	6.006215
96.0	6.006215
97.0	6.006215
98.0	6.006215
99.0	6.006215
100.0	6.006215