## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS168_B_Li1-CRR995087.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS168_B_Li1-CRR995087.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS168_B_Li1-CRR995087.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:12 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8483186	0	0	1334205	728283	0.157276	47005518

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.085713
2.0	1.992149
3.0	2.74891
4.0	3.380712
5.0	3.908188
6.0	4.348565
7.0	4.716225
8.0	5.023176
9.0	5.279442
10.0	5.493392
11.0	5.672014
12.0	5.821141
13.0	5.945644
14.0	6.049588
15.0	6.136368
16.0	6.208819
17.0	6.269307
18.0	6.319807
19.0	6.361968
20.0	6.397167
21.0	6.426554
22.0	6.451088
23.0	6.471571
24.0	6.488672
25.0	6.502949
26.0	6.514869
27.0	6.52482
28.0	6.533129
29.0	6.540065
30.0	6.545856
31.0	6.550691
32.0	6.554727
33.0	6.558097
34.0	6.56091
35.0	6.563259
36.0	6.56522
37.0	6.566858
38.0	6.568224
39.0	6.569366
40.0	6.570318
41.0	6.571114
42.0	6.571778
43.0	6.572332
44.0	6.572795
45.0	6.573182
46.0	6.573504
47.0	6.573774
48.0	6.573998
49.0	6.574186
50.0	6.574343
51.0	6.574474
52.0	6.574583
53.0	6.574674
54.0	6.57475
55.0	6.574814
56.0	6.574867
57.0	6.574911
58.0	6.574948
59.0	6.574979
60.0	6.575005
61.0	6.575027
62.0	6.575045
63.0	6.57506
64.0	6.575072
65.0	6.575083
66.0	6.575091
67.0	6.575099
68.0	6.575105
69.0	6.57511
70.0	6.575114
71.0	6.575117
72.0	6.57512
73.0	6.575123
74.0	6.575125
75.0	6.575127
76.0	6.575128
77.0	6.575129
78.0	6.57513
79.0	6.575131
80.0	6.575132
81.0	6.575132
82.0	6.575133
83.0	6.575133
84.0	6.575134
85.0	6.575134
86.0	6.575134
87.0	6.575134
88.0	6.575135
89.0	6.575135
90.0	6.575135
91.0	6.575135
92.0	6.575135
93.0	6.575135
94.0	6.575135
95.0	6.575135
96.0	6.575135
97.0	6.575135
98.0	6.575135
99.0	6.575135
100.0	6.575135