## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS115_Mu3-CRR995085.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS115_Mu3-CRR995085.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS115_Mu3-CRR995085.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:09 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20629985	0	0	4613961	3303655	0.223653	108702716

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.173234
2.0	2.143661
3.0	2.946339
4.0	3.610264
5.0	4.159421
6.0	4.61365
7.0	4.989361
8.0	5.300125
9.0	5.55717
10.0	5.769782
11.0	5.945641
12.0	6.091101
13.0	6.211417
14.0	6.310934
15.0	6.393249
16.0	6.461335
17.0	6.517651
18.0	6.564232
19.0	6.602762
20.0	6.634631
21.0	6.660991
22.0	6.682794
23.0	6.700828
24.0	6.715745
25.0	6.728084
26.0	6.738289
27.0	6.746731
28.0	6.753713
29.0	6.759488
30.0	6.764265
31.0	6.768216
32.0	6.771484
33.0	6.774188
34.0	6.776424
35.0	6.778273
36.0	6.779803
37.0	6.781068
38.0	6.782115
39.0	6.78298
40.0	6.783696
41.0	6.784289
42.0	6.784778
43.0	6.785184
44.0	6.785519
45.0	6.785796
46.0	6.786025
47.0	6.786215
48.0	6.786372
49.0	6.786502
50.0	6.786609
51.0	6.786698
52.0	6.786771
53.0	6.786832
54.0	6.786882
55.0	6.786924
56.0	6.786958
57.0	6.786986
58.0	6.78701
59.0	6.787029
60.0	6.787045
61.0	6.787059
62.0	6.78707
63.0	6.787079
64.0	6.787086
65.0	6.787093
66.0	6.787098
67.0	6.787102
68.0	6.787106
69.0	6.787108
70.0	6.787111
71.0	6.787113
72.0	6.787115
73.0	6.787116
74.0	6.787117
75.0	6.787118
76.0	6.787119
77.0	6.787119
78.0	6.78712
79.0	6.78712
80.0	6.787121
81.0	6.787121
82.0	6.787121
83.0	6.787121
84.0	6.787122
85.0	6.787122
86.0	6.787122
87.0	6.787122
88.0	6.787122
89.0	6.787122
90.0	6.787122
91.0	6.787122
92.0	6.787122
93.0	6.787122
94.0	6.787122
95.0	6.787122
96.0	6.787122
97.0	6.787122
98.0	6.787122
99.0	6.787122
100.0	6.787122