## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS115_Br3-CRR995079.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS115_Br3-CRR995079.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS115_Br3-CRR995079.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:14 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17353080	0	0	3875521	2851230	0.223333	97765052

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.179756
2.0	2.16764
3.0	2.994857
4.0	3.687538
5.0	4.267563
6.0	4.753254
7.0	5.159955
8.0	5.50051
9.0	5.785679
10.0	6.024468
11.0	6.224422
12.0	6.391855
13.0	6.532058
14.0	6.649459
15.0	6.747766
16.0	6.830084
17.0	6.899015
18.0	6.956734
19.0	7.005067
20.0	7.045539
21.0	7.079428
22.0	7.107806
23.0	7.131569
24.0	7.151466
25.0	7.168128
26.0	7.18208
27.0	7.193763
28.0	7.203546
29.0	7.211737
30.0	7.218597
31.0	7.224341
32.0	7.22915
33.0	7.233178
34.0	7.23655
35.0	7.239374
36.0	7.241739
37.0	7.243719
38.0	7.245377
39.0	7.246765
40.0	7.247928
41.0	7.248902
42.0	7.249717
43.0	7.250399
44.0	7.250971
45.0	7.25145
46.0	7.25185
47.0	7.252186
48.0	7.252467
49.0	7.252702
50.0	7.252899
51.0	7.253064
52.0	7.253203
53.0	7.253318
54.0	7.253415
55.0	7.253496
56.0	7.253564
57.0	7.253621
58.0	7.253669
59.0	7.253709
60.0	7.253742
61.0	7.25377
62.0	7.253793
63.0	7.253813
64.0	7.253829
65.0	7.253843
66.0	7.253855
67.0	7.253864
68.0	7.253872
69.0	7.253879
70.0	7.253885
71.0	7.253889
72.0	7.253893
73.0	7.253897
74.0	7.2539
75.0	7.253902
76.0	7.253904
77.0	7.253905
78.0	7.253907
79.0	7.253908
80.0	7.253909
81.0	7.25391
82.0	7.25391
83.0	7.253911
84.0	7.253911
85.0	7.253912
86.0	7.253912
87.0	7.253912
88.0	7.253913
89.0	7.253913
90.0	7.253913
91.0	7.253913
92.0	7.253913
93.0	7.253913
94.0	7.253913
95.0	7.253914
96.0	7.253914
97.0	7.253914
98.0	7.253914
99.0	7.253914
100.0	7.253914