## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS115_Br2-CRR995078.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS115_Br2-CRR995078.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS115_Br2-CRR995078.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:13 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17964298	0	0	5399624	3512215	0.300575	50400311

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.2027
2.0	2.044794
3.0	2.634403
4.0	3.047229
5.0	3.336278
6.0	3.538661
7.0	3.680364
8.0	3.77958
9.0	3.849048
10.0	3.897687
11.0	3.931743
12.0	3.955588
13.0	3.972283
14.0	3.983973
15.0	3.992158
16.0	3.997888
17.0	4.001901
18.0	4.00471
19.0	4.006677
20.0	4.008055
21.0	4.009019
22.0	4.009694
23.0	4.010167
24.0	4.010498
25.0	4.01073
26.0	4.010892
27.0	4.011006
28.0	4.011085
29.0	4.011141
30.0	4.01118
31.0	4.011207
32.0	4.011226
33.0	4.01124
34.0	4.011249
35.0	4.011256
36.0	4.01126
37.0	4.011263
38.0	4.011266
39.0	4.011267
40.0	4.011268
41.0	4.011269
42.0	4.01127
43.0	4.01127
44.0	4.01127
45.0	4.01127
46.0	4.011271
47.0	4.011271
48.0	4.011271
49.0	4.011271
50.0	4.011271
51.0	4.011271
52.0	4.011271
53.0	4.011271
54.0	4.011271
55.0	4.011271
56.0	4.011271
57.0	4.011271
58.0	4.011271
59.0	4.011271
60.0	4.011271
61.0	4.011271
62.0	4.011271
63.0	4.011271
64.0	4.011271
65.0	4.011271
66.0	4.011271
67.0	4.011271
68.0	4.011271
69.0	4.011271
70.0	4.011271
71.0	4.011271
72.0	4.011271
73.0	4.011271
74.0	4.011271
75.0	4.011271
76.0	4.011271
77.0	4.011271
78.0	4.011271
79.0	4.011271
80.0	4.011271
81.0	4.011271
82.0	4.011271
83.0	4.011271
84.0	4.011271
85.0	4.011271
86.0	4.011271
87.0	4.011271
88.0	4.011271
89.0	4.011271
90.0	4.011271
91.0	4.011271
92.0	4.011271
93.0	4.011271
94.0	4.011271
95.0	4.011271
96.0	4.011271
97.0	4.011271
98.0	4.011271
99.0	4.011271
100.0	4.011271