## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Pl3-CRR995064.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Pl3-CRR995064.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Pl3-CRR995064.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:13 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12819092	0	0	2355167	1915036	0.183723	131411967

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.167219
2.0	2.225954
3.0	3.186289
4.0	4.057368
5.0	4.847487
6.0	5.564171
7.0	6.214244
8.0	6.803899
9.0	7.33875
10.0	7.823891
11.0	8.263942
12.0	8.663093
13.0	9.025147
14.0	9.353551
15.0	9.651432
16.0	9.921628
17.0	10.166711
18.0	10.389015
19.0	10.590658
20.0	10.77356
21.0	10.939463
22.0	11.089946
23.0	11.226443
24.0	11.350254
25.0	11.462558
26.0	11.564424
27.0	11.656822
28.0	11.740632
29.0	11.816653
30.0	11.885609
31.0	11.948156
32.0	12.004889
33.0	12.05635
34.0	12.103027
35.0	12.145367
36.0	12.183771
37.0	12.218606
38.0	12.250203
39.0	12.278863
40.0	12.30486
41.0	12.328441
42.0	12.34983
43.0	12.369231
44.0	12.386829
45.0	12.402791
46.0	12.41727
47.0	12.430403
48.0	12.442315
49.0	12.45312
50.0	12.462921
51.0	12.471811
52.0	12.479875
53.0	12.48719
54.0	12.493824
55.0	12.499842
56.0	12.505301
57.0	12.510252
58.0	12.514743
59.0	12.518817
60.0	12.522512
61.0	12.525863
62.0	12.528903
63.0	12.531661
64.0	12.534162
65.0	12.536431
66.0	12.538489
67.0	12.540356
68.0	12.542049
69.0	12.543585
70.0	12.544978
71.0	12.546241
72.0	12.547387
73.0	12.548427
74.0	12.54937
75.0	12.550225
76.0	12.551001
77.0	12.551705
78.0	12.552343
79.0	12.552922
80.0	12.553447
81.0	12.553924
82.0	12.554356
83.0	12.554748
84.0	12.555103
85.0	12.555426
86.0	12.555718
87.0	12.555984
88.0	12.556224
89.0	12.556443
90.0	12.556641
91.0	12.55682
92.0	12.556983
93.0	12.557131
94.0	12.557265
95.0	12.557387
96.0	12.557497
97.0	12.557597
98.0	12.557688
99.0	12.55777
100.0	12.557845