## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Pl2-CRR995063.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Pl2-CRR995063.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Pl2-CRR995063.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:10 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	11568726	0	0	3218909	2543228	0.278242	57232024

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.254452
2.0	2.279318
3.0	3.116616
4.0	3.800674
5.0	4.359537
6.0	4.816119
7.0	5.189139
8.0	5.493889
9.0	5.742865
10.0	5.946274
11.0	6.112456
12.0	6.248223
13.0	6.359143
14.0	6.449762
15.0	6.523797
16.0	6.584282
17.0	6.633697
18.0	6.674068
19.0	6.707051
20.0	6.733997
21.0	6.756012
22.0	6.773998
23.0	6.788692
24.0	6.800696
25.0	6.810504
26.0	6.818517
27.0	6.825063
28.0	6.830411
29.0	6.83478
30.0	6.83835
31.0	6.841266
32.0	6.843649
33.0	6.845595
34.0	6.847186
35.0	6.848485
36.0	6.849546
37.0	6.850414
38.0	6.851122
39.0	6.851701
40.0	6.852174
41.0	6.85256
42.0	6.852876
43.0	6.853134
44.0	6.853344
45.0	6.853517
46.0	6.853657
47.0	6.853772
48.0	6.853866
49.0	6.853943
50.0	6.854005
51.0	6.854056
52.0	6.854098
53.0	6.854132
54.0	6.85416
55.0	6.854183
56.0	6.854202
57.0	6.854217
58.0	6.854229
59.0	6.854239
60.0	6.854248
61.0	6.854255
62.0	6.85426
63.0	6.854265
64.0	6.854268
65.0	6.854271
66.0	6.854274
67.0	6.854276
68.0	6.854277
69.0	6.854279
70.0	6.85428
71.0	6.854281
72.0	6.854282
73.0	6.854282
74.0	6.854283
75.0	6.854283
76.0	6.854283
77.0	6.854284
78.0	6.854284
79.0	6.854284
80.0	6.854284
81.0	6.854284
82.0	6.854284
83.0	6.854284
84.0	6.854285
85.0	6.854285
86.0	6.854285
87.0	6.854285
88.0	6.854285
89.0	6.854285
90.0	6.854285
91.0	6.854285
92.0	6.854285
93.0	6.854285
94.0	6.854285
95.0	6.854285
96.0	6.854285
97.0	6.854285
98.0	6.854285
99.0	6.854285
100.0	6.854285