## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Mu3-CRR995061.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Mu3-CRR995061.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Mu3-CRR995061.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:10 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	16909998	0	0	2360900	1686776	0.139616	166774366

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.105289
2.0	2.104003
3.0	3.006417
4.0	3.821817
5.0	4.558594
6.0	5.224328
7.0	5.825869
8.0	6.369408
9.0	6.860537
10.0	7.304309
11.0	7.705292
12.0	8.06761
13.0	8.394993
14.0	8.690808
15.0	8.958099
16.0	9.199618
17.0	9.417848
18.0	9.615036
19.0	9.79321
20.0	9.954204
21.0	10.099674
22.0	10.231118
23.0	10.349888
24.0	10.457205
25.0	10.554174
26.0	10.641793
27.0	10.720964
28.0	10.792501
29.0	10.85714
30.0	10.915546
31.0	10.968321
32.0	11.016006
33.0	11.059094
34.0	11.098027
35.0	11.133206
36.0	11.164993
37.0	11.193715
38.0	11.219668
39.0	11.243118
40.0	11.264307
41.0	11.283453
42.0	11.300752
43.0	11.316384
44.0	11.330508
45.0	11.343271
46.0	11.354802
47.0	11.365222
48.0	11.374638
49.0	11.383145
50.0	11.390832
51.0	11.397778
52.0	11.404054
53.0	11.409725
54.0	11.414849
55.0	11.419479
56.0	11.423662
57.0	11.427443
58.0	11.430858
59.0	11.433945
60.0	11.436733
61.0	11.439253
62.0	11.44153
63.0	11.443587
64.0	11.445446
65.0	11.447126
66.0	11.448644
67.0	11.450015
68.0	11.451254
69.0	11.452374
70.0	11.453386
71.0	11.4543
72.0	11.455126
73.0	11.455872
74.0	11.456547
75.0	11.457156
76.0	11.457707
77.0	11.458204
78.0	11.458654
79.0	11.45906
80.0	11.459427
81.0	11.459759
82.0	11.460058
83.0	11.460329
84.0	11.460574
85.0	11.460795
86.0	11.460994
87.0	11.461175
88.0	11.461338
89.0	11.461485
90.0	11.461619
91.0	11.461739
92.0	11.461848
93.0	11.461946
94.0	11.462035
95.0	11.462115
96.0	11.462187
97.0	11.462253
98.0	11.462312
99.0	11.462365
100.0	11.462414