## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Mu2-CRR995060.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Mu2-CRR995060.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Mu2-CRR995060.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:09 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	16270207	0	0	1858998	1473399	0.114258	278949136

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.096702
2.0	2.131267
3.0	3.107215
4.0	4.027868
5.0	4.896357
6.0	5.71564
7.0	6.488503
8.0	7.217577
9.0	7.905343
10.0	8.554142
11.0	9.16618
12.0	9.743542
13.0	10.288191
14.0	10.801981
15.0	11.28666
16.0	11.743879
17.0	12.175192
18.0	12.582067
19.0	12.96589
20.0	13.327966
21.0	13.669527
22.0	13.991736
23.0	14.295689
24.0	14.582421
25.0	14.852907
26.0	15.108068
27.0	15.348771
28.0	15.575837
29.0	15.790038
30.0	15.992102
31.0	16.182718
32.0	16.362533
33.0	16.532161
34.0	16.692178
35.0	16.843128
36.0	16.985526
37.0	17.119856
38.0	17.246575
39.0	17.366115
40.0	17.478881
41.0	17.585258
42.0	17.685608
43.0	17.780273
44.0	17.869573
45.0	17.953815
46.0	18.033283
47.0	18.108249
48.0	18.178967
49.0	18.245678
50.0	18.30861
51.0	18.367976
52.0	18.423979
53.0	18.476808
54.0	18.526645
55.0	18.573657
56.0	18.618006
57.0	18.659842
58.0	18.699308
59.0	18.736538
60.0	18.771658
61.0	18.804789
62.0	18.836042
63.0	18.865525
64.0	18.893337
65.0	18.919574
66.0	18.944324
67.0	18.967671
68.0	18.989696
69.0	19.010473
70.0	19.030073
71.0	19.048562
72.0	19.066003
73.0	19.082457
74.0	19.097978
75.0	19.11262
76.0	19.126432
77.0	19.139462
78.0	19.151753
79.0	19.163348
80.0	19.174286
81.0	19.184605
82.0	19.194338
83.0	19.20352
84.0	19.212182
85.0	19.220354
86.0	19.228062
87.0	19.235333
88.0	19.242193
89.0	19.248664
90.0	19.254768
91.0	19.260526
92.0	19.265958
93.0	19.271083
94.0	19.275917
95.0	19.280477
96.0	19.284778
97.0	19.288836
98.0	19.292664
99.0	19.296276
100.0	19.299682