## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Li3-CRR995058.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Li3-CRR995058.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Li3-CRR995058.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:08 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	24398469	0	0	5569743	3088654	0.228282	84263494

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.125078
2.0	1.967313
3.0	2.59781
4.0	3.0698
5.0	3.423133
6.0	3.687638
7.0	3.885646
8.0	4.033875
9.0	4.14484
10.0	4.227908
11.0	4.290093
12.0	4.336644
13.0	4.371493
14.0	4.397581
15.0	4.41711
16.0	4.431729
17.0	4.442674
18.0	4.450866
19.0	4.457
20.0	4.461591
21.0	4.465028
22.0	4.467601
23.0	4.469527
24.0	4.470969
25.0	4.472048
26.0	4.472856
27.0	4.473461
28.0	4.473914
29.0	4.474253
30.0	4.474507
31.0	4.474697
32.0	4.474839
33.0	4.474946
34.0	4.475025
35.0	4.475085
36.0	4.47513
37.0	4.475163
38.0	4.475188
39.0	4.475207
40.0	4.475221
41.0	4.475231
42.0	4.475239
43.0	4.475245
44.0	4.47525
45.0	4.475253
46.0	4.475255
47.0	4.475257
48.0	4.475259
49.0	4.47526
50.0	4.47526
51.0	4.475261
52.0	4.475261
53.0	4.475262
54.0	4.475262
55.0	4.475262
56.0	4.475262
57.0	4.475262
58.0	4.475262
59.0	4.475262
60.0	4.475263
61.0	4.475263
62.0	4.475263
63.0	4.475263
64.0	4.475263
65.0	4.475263
66.0	4.475263
67.0	4.475263
68.0	4.475263
69.0	4.475263
70.0	4.475263
71.0	4.475263
72.0	4.475263
73.0	4.475263
74.0	4.475263
75.0	4.475263
76.0	4.475263
77.0	4.475263
78.0	4.475263
79.0	4.475263
80.0	4.475263
81.0	4.475263
82.0	4.475263
83.0	4.475263
84.0	4.475263
85.0	4.475263
86.0	4.475263
87.0	4.475263
88.0	4.475263
89.0	4.475263
90.0	4.475263
91.0	4.475263
92.0	4.475263
93.0	4.475263
94.0	4.475263
95.0	4.475263
96.0	4.475263
97.0	4.475263
98.0	4.475263
99.0	4.475263
100.0	4.475263