## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Li2-CRR995057.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Li2-CRR995057.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Li2-CRR995057.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:10 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17925137	0	0	10835267	6713342	0.604473	11221882

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.26239
2.0	1.517942
3.0	1.569675
4.0	1.580147
5.0	1.582267
6.0	1.582696
7.0	1.582783
8.0	1.582801
9.0	1.582804
10.0	1.582805
11.0	1.582805
12.0	1.582805
13.0	1.582805
14.0	1.582805
15.0	1.582805
16.0	1.582805
17.0	1.582805
18.0	1.582805
19.0	1.582805
20.0	1.582805
21.0	1.582805
22.0	1.582805
23.0	1.582805
24.0	1.582805
25.0	1.582805
26.0	1.582805
27.0	1.582805
28.0	1.582805
29.0	1.582805
30.0	1.582805
31.0	1.582805
32.0	1.582805
33.0	1.582805
34.0	1.582805
35.0	1.582805
36.0	1.582805
37.0	1.582805
38.0	1.582805
39.0	1.582805
40.0	1.582805
41.0	1.582805
42.0	1.582805
43.0	1.582805
44.0	1.582805
45.0	1.582805
46.0	1.582805
47.0	1.582805
48.0	1.582805
49.0	1.582805
50.0	1.582805
51.0	1.582805
52.0	1.582805
53.0	1.582805
54.0	1.582805
55.0	1.582805
56.0	1.582805
57.0	1.582805
58.0	1.582805
59.0	1.582805
60.0	1.582805
61.0	1.582805
62.0	1.582805
63.0	1.582805
64.0	1.582805
65.0	1.582805
66.0	1.582805
67.0	1.582805
68.0	1.582805
69.0	1.582805
70.0	1.582805
71.0	1.582805
72.0	1.582805
73.0	1.582805
74.0	1.582805
75.0	1.582805
76.0	1.582805
77.0	1.582805
78.0	1.582805
79.0	1.582805
80.0	1.582805
81.0	1.582805
82.0	1.582805
83.0	1.582805
84.0	1.582805
85.0	1.582805
86.0	1.582805
87.0	1.582805
88.0	1.582805
89.0	1.582805
90.0	1.582805
91.0	1.582805
92.0	1.582805
93.0	1.582805
94.0	1.582805
95.0	1.582805
96.0	1.582805
97.0	1.582805
98.0	1.582805
99.0	1.582805
100.0	1.582805