## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Li1-CRR995056.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Li1-CRR995056.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Li1-CRR995056.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:09 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20487135	0	0	6678033	5441223	0.325962	86430275

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.32087
2.0	2.362988
3.0	3.185179
4.0	3.833857
5.0	4.345639
6.0	4.749417
7.0	5.067982
8.0	5.319318
9.0	5.517612
10.0	5.674059
11.0	5.79749
12.0	5.894872
13.0	5.971703
14.0	6.03232
15.0	6.080144
16.0	6.117876
17.0	6.147645
18.0	6.171131
19.0	6.189661
20.0	6.204281
21.0	6.215815
22.0	6.224915
23.0	6.232094
24.0	6.237759
25.0	6.242228
26.0	6.245754
27.0	6.248536
28.0	6.25073
29.0	6.252462
30.0	6.253828
31.0	6.254906
32.0	6.255756
33.0	6.256427
34.0	6.256956
35.0	6.257374
36.0	6.257703
37.0	6.257963
38.0	6.258169
39.0	6.25833
40.0	6.258458
41.0	6.258559
42.0	6.258638
43.0	6.258701
44.0	6.25875
45.0	6.258789
46.0	6.25882
47.0	6.258844
48.0	6.258864
49.0	6.258879
50.0	6.258891
51.0	6.2589
52.0	6.258907
53.0	6.258913
54.0	6.258918
55.0	6.258922
56.0	6.258924
57.0	6.258927
58.0	6.258929
59.0	6.25893
60.0	6.258931
61.0	6.258932
62.0	6.258933
63.0	6.258933
64.0	6.258934
65.0	6.258934
66.0	6.258934
67.0	6.258934
68.0	6.258935
69.0	6.258935
70.0	6.258935
71.0	6.258935
72.0	6.258935
73.0	6.258935
74.0	6.258935
75.0	6.258935
76.0	6.258935
77.0	6.258935
78.0	6.258935
79.0	6.258935
80.0	6.258935
81.0	6.258935
82.0	6.258935
83.0	6.258935
84.0	6.258935
85.0	6.258935
86.0	6.258935
87.0	6.258935
88.0	6.258935
89.0	6.258935
90.0	6.258935
91.0	6.258935
92.0	6.258935
93.0	6.258935
94.0	6.258935
95.0	6.258935
96.0	6.258935
97.0	6.258935
98.0	6.258935
99.0	6.258935
100.0	6.258935