## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB40_Br3-CRR995055.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB40_Br3-CRR995055.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB40_Br3-CRR995055.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:10 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	32402932	0	0	9813927	8093678	0.302872	163557528

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.3013
2.0	2.368726
3.0	3.244311
4.0	3.962534
5.0	4.551675
6.0	5.034933
7.0	5.431339
8.0	5.756502
9.0	6.023225
10.0	6.242012
11.0	6.421478
12.0	6.56869
13.0	6.689445
14.0	6.788497
15.0	6.869747
16.0	6.936394
17.0	6.991064
18.0	7.035908
19.0	7.072692
20.0	7.102866
21.0	7.127617
22.0	7.147919
23.0	7.164573
24.0	7.178233
25.0	7.189438
26.0	7.19863
27.0	7.20617
28.0	7.212354
29.0	7.217427
30.0	7.221589
31.0	7.225002
32.0	7.227802
33.0	7.230099
34.0	7.231983
35.0	7.233528
36.0	7.234796
37.0	7.235836
38.0	7.236688
39.0	7.237388
40.0	7.237962
41.0	7.238433
42.0	7.238819
43.0	7.239136
44.0	7.239395
45.0	7.239609
46.0	7.239783
47.0	7.239927
48.0	7.240044
49.0	7.240141
50.0	7.24022
51.0	7.240285
52.0	7.240338
53.0	7.240382
54.0	7.240418
55.0	7.240447
56.0	7.240471
57.0	7.240491
58.0	7.240507
59.0	7.240521
60.0	7.240532
61.0	7.24054
62.0	7.240548
63.0	7.240554
64.0	7.240559
65.0	7.240563
66.0	7.240566
67.0	7.240569
68.0	7.240571
69.0	7.240573
70.0	7.240574
71.0	7.240576
72.0	7.240577
73.0	7.240578
74.0	7.240578
75.0	7.240579
76.0	7.240579
77.0	7.24058
78.0	7.24058
79.0	7.24058
80.0	7.24058
81.0	7.240581
82.0	7.240581
83.0	7.240581
84.0	7.240581
85.0	7.240581
86.0	7.240581
87.0	7.240581
88.0	7.240581
89.0	7.240581
90.0	7.240581
91.0	7.240581
92.0	7.240581
93.0	7.240581
94.0	7.240581
95.0	7.240581
96.0	7.240581
97.0	7.240581
98.0	7.240581
99.0	7.240581
100.0	7.240581