## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB168_H_Mu3-CRR995052.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB168_H_Mu3-CRR995052.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB168_H_Mu3-CRR995052.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:08 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17283434	0	0	4844842	3046095	0.280317	51492214

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.180347
2.0	2.024145
3.0	2.627352
4.0	3.058569
5.0	3.366833
6.0	3.587203
7.0	3.744739
8.0	3.857357
9.0	3.937865
10.0	3.995418
11.0	4.036561
12.0	4.065973
13.0	4.086998
14.0	4.102029
15.0	4.112774
16.0	4.120455
17.0	4.125947
18.0	4.129872
19.0	4.132678
20.0	4.134684
21.0	4.136118
22.0	4.137144
23.0	4.137877
24.0	4.1384
25.0	4.138775
26.0	4.139043
27.0	4.139234
28.0	4.139371
29.0	4.139469
30.0	4.139539
31.0	4.139589
32.0	4.139624
33.0	4.13965
34.0	4.139668
35.0	4.139681
36.0	4.139691
37.0	4.139697
38.0	4.139702
39.0	4.139705
40.0	4.139708
41.0	4.13971
42.0	4.139711
43.0	4.139712
44.0	4.139712
45.0	4.139713
46.0	4.139713
47.0	4.139713
48.0	4.139714
49.0	4.139714
50.0	4.139714
51.0	4.139714
52.0	4.139714
53.0	4.139714
54.0	4.139714
55.0	4.139714
56.0	4.139714
57.0	4.139714
58.0	4.139714
59.0	4.139714
60.0	4.139714
61.0	4.139714
62.0	4.139714
63.0	4.139714
64.0	4.139714
65.0	4.139714
66.0	4.139714
67.0	4.139714
68.0	4.139714
69.0	4.139714
70.0	4.139714
71.0	4.139714
72.0	4.139714
73.0	4.139714
74.0	4.139714
75.0	4.139714
76.0	4.139714
77.0	4.139714
78.0	4.139714
79.0	4.139714
80.0	4.139714
81.0	4.139714
82.0	4.139714
83.0	4.139714
84.0	4.139714
85.0	4.139714
86.0	4.139714
87.0	4.139714
88.0	4.139714
89.0	4.139714
90.0	4.139714
91.0	4.139714
92.0	4.139714
93.0	4.139714
94.0	4.139714
95.0	4.139714
96.0	4.139714
97.0	4.139714
98.0	4.139714
99.0	4.139714
100.0	4.139714