## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LB168_G_Li1-CRR995048.2x36mers.noMT.bwa.unique.bam] OUTPUT=LB168_G_Li1-CRR995048.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LB168_G_Li1-CRR995048.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:08 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15575666	0	0	3539793	2227495	0.227264	63359742

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.14731
2.0	2.044571
3.0	2.746279
4.0	3.295054
5.0	3.724227
6.0	4.059864
7.0	4.322351
8.0	4.527631
9.0	4.688171
10.0	4.813722
11.0	4.91191
12.0	4.988699
13.0	5.048751
14.0	5.095716
15.0	5.132445
16.0	5.16117
17.0	5.183633
18.0	5.201202
19.0	5.214941
20.0	5.225686
21.0	5.234089
22.0	5.24066
23.0	5.2458
24.0	5.249819
25.0	5.252962
26.0	5.25542
27.0	5.257343
28.0	5.258846
29.0	5.260022
30.0	5.260942
31.0	5.261661
32.0	5.262223
33.0	5.262663
34.0	5.263007
35.0	5.263276
36.0	5.263487
37.0	5.263651
38.0	5.26378
39.0	5.26388
40.0	5.263959
41.0	5.264021
42.0	5.264069
43.0	5.264106
44.0	5.264136
45.0	5.264159
46.0	5.264177
47.0	5.264191
48.0	5.264202
49.0	5.264211
50.0	5.264217
51.0	5.264223
52.0	5.264227
53.0	5.26423
54.0	5.264232
55.0	5.264234
56.0	5.264236
57.0	5.264237
58.0	5.264238
59.0	5.264239
60.0	5.264239
61.0	5.26424
62.0	5.26424
63.0	5.26424
64.0	5.264241
65.0	5.264241
66.0	5.264241
67.0	5.264241
68.0	5.264241
69.0	5.264241
70.0	5.264241
71.0	5.264241
72.0	5.264241
73.0	5.264241
74.0	5.264241
75.0	5.264241
76.0	5.264241
77.0	5.264241
78.0	5.264241
79.0	5.264241
80.0	5.264241
81.0	5.264241
82.0	5.264241
83.0	5.264241
84.0	5.264241
85.0	5.264241
86.0	5.264241
87.0	5.264241
88.0	5.264241
89.0	5.264241
90.0	5.264241
91.0	5.264241
92.0	5.264241
93.0	5.264241
94.0	5.264241
95.0	5.264241
96.0	5.264241
97.0	5.264241
98.0	5.264241
99.0	5.264241
100.0	5.264241