## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS70_Mu3-CRR995032.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS70_Mu3-CRR995032.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS70_Mu3-CRR995032.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:21 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17653899	0	0	3996850	2134105	0.2264	59369016

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.118181
2.0	1.94874
3.0	2.565661
4.0	3.023896
5.0	3.364262
6.0	3.617079
7.0	3.804866
8.0	3.944349
9.0	4.047954
10.0	4.12491
11.0	4.182071
12.0	4.224529
13.0	4.256065
14.0	4.27949
15.0	4.29689
16.0	4.309813
17.0	4.319413
18.0	4.326543
19.0	4.33184
20.0	4.335774
21.0	4.338696
22.0	4.340866
23.0	4.342478
24.0	4.343676
25.0	4.344565
26.0	4.345226
27.0	4.345716
28.0	4.346081
29.0	4.346352
30.0	4.346553
31.0	4.346702
32.0	4.346813
33.0	4.346896
34.0	4.346957
35.0	4.347002
36.0	4.347036
37.0	4.347061
38.0	4.34708
39.0	4.347094
40.0	4.347104
41.0	4.347112
42.0	4.347117
43.0	4.347121
44.0	4.347125
45.0	4.347127
46.0	4.347129
47.0	4.34713
48.0	4.347131
49.0	4.347132
50.0	4.347132
51.0	4.347132
52.0	4.347133
53.0	4.347133
54.0	4.347133
55.0	4.347133
56.0	4.347133
57.0	4.347133
58.0	4.347133
59.0	4.347133
60.0	4.347133
61.0	4.347133
62.0	4.347134
63.0	4.347134
64.0	4.347134
65.0	4.347134
66.0	4.347134
67.0	4.347134
68.0	4.347134
69.0	4.347134
70.0	4.347134
71.0	4.347134
72.0	4.347134
73.0	4.347134
74.0	4.347134
75.0	4.347134
76.0	4.347134
77.0	4.347134
78.0	4.347134
79.0	4.347134
80.0	4.347134
81.0	4.347134
82.0	4.347134
83.0	4.347134
84.0	4.347134
85.0	4.347134
86.0	4.347134
87.0	4.347134
88.0	4.347134
89.0	4.347134
90.0	4.347134
91.0	4.347134
92.0	4.347134
93.0	4.347134
94.0	4.347134
95.0	4.347134
96.0	4.347134
97.0	4.347134
98.0	4.347134
99.0	4.347134
100.0	4.347134