## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS70_Li2-CRR995028.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS70_Li2-CRR995028.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS70_Li2-CRR995028.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:21 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	29429795	0	0	5237380	3144527	0.177962	156182177

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.108748
2.0	2.027075
3.0	2.787686
4.0	3.417666
5.0	3.939452
6.0	4.371624
7.0	4.729573
8.0	5.026047
9.0	5.271604
10.0	5.474987
11.0	5.643441
12.0	5.782964
13.0	5.898525
14.0	5.994239
15.0	6.073515
16.0	6.139175
17.0	6.193559
18.0	6.238603
19.0	6.275911
20.0	6.306811
21.0	6.332405
22.0	6.353602
23.0	6.37116
24.0	6.385702
25.0	6.397746
26.0	6.407722
27.0	6.415985
28.0	6.422828
29.0	6.428497
30.0	6.433191
31.0	6.43708
32.0	6.4403
33.0	6.442968
34.0	6.445177
35.0	6.447007
36.0	6.448523
37.0	6.449778
38.0	6.450818
39.0	6.451679
40.0	6.452393
41.0	6.452983
42.0	6.453473
43.0	6.453878
44.0	6.454214
45.0	6.454492
46.0	6.454722
47.0	6.454913
48.0	6.455071
49.0	6.455201
50.0	6.45531
51.0	6.4554
52.0	6.455474
53.0	6.455535
54.0	6.455586
55.0	6.455629
56.0	6.455664
57.0	6.455693
58.0	6.455717
59.0	6.455737
60.0	6.455753
61.0	6.455767
62.0	6.455778
63.0	6.455787
64.0	6.455795
65.0	6.455801
66.0	6.455807
67.0	6.455811
68.0	6.455815
69.0	6.455818
70.0	6.45582
71.0	6.455822
72.0	6.455824
73.0	6.455826
74.0	6.455827
75.0	6.455828
76.0	6.455829
77.0	6.455829
78.0	6.45583
79.0	6.45583
80.0	6.455831
81.0	6.455831
82.0	6.455831
83.0	6.455831
84.0	6.455832
85.0	6.455832
86.0	6.455832
87.0	6.455832
88.0	6.455832
89.0	6.455832
90.0	6.455832
91.0	6.455832
92.0	6.455832
93.0	6.455832
94.0	6.455832
95.0	6.455832
96.0	6.455832
97.0	6.455832
98.0	6.455832
99.0	6.455832
100.0	6.455832