## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS70_Li1-CRR995027.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS70_Li1-CRR995027.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS70_Li1-CRR995027.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:21 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18258580	0	0	2667220	1931377	0.14608	175653229

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.112261
2.0	2.114712
3.0	3.018195
4.0	3.83248
5.0	4.566373
6.0	5.227811
7.0	5.823947
8.0	6.36123
9.0	6.845467
10.0	7.281898
11.0	7.675241
12.0	8.029751
13.0	8.349262
14.0	8.637228
15.0	8.896764
16.0	9.130677
17.0	9.341496
18.0	9.531502
19.0	9.70275
20.0	9.85709
21.0	9.996194
22.0	10.121563
23.0	10.234556
24.0	10.336393
25.0	10.428176
26.0	10.510898
27.0	10.585453
28.0	10.652647
29.0	10.713208
30.0	10.767789
31.0	10.816982
32.0	10.861318
33.0	10.901277
34.0	10.937291
35.0	10.96975
36.0	10.999004
37.0	11.025369
38.0	11.049132
39.0	11.070549
40.0	11.089851
41.0	11.107248
42.0	11.122927
43.0	11.137058
44.0	11.149795
45.0	11.161273
46.0	11.171619
47.0	11.180943
48.0	11.189346
49.0	11.19692
50.0	11.203746
51.0	11.209899
52.0	11.215443
53.0	11.220441
54.0	11.224945
55.0	11.229004
56.0	11.232663
57.0	11.23596
58.0	11.238932
59.0	11.241611
60.0	11.244025
61.0	11.2462
62.0	11.248161
63.0	11.249928
64.0	11.251521
65.0	11.252957
66.0	11.254251
67.0	11.255417
68.0	11.256468
69.0	11.257415
70.0	11.258269
71.0	11.259038
72.0	11.259731
73.0	11.260356
74.0	11.26092
75.0	11.261427
76.0	11.261885
77.0	11.262297
78.0	11.262669
79.0	11.263004
80.0	11.263306
81.0	11.263578
82.0	11.263823
83.0	11.264044
84.0	11.264244
85.0	11.264423
86.0	11.264585
87.0	11.264731
88.0	11.264862
89.0	11.264981
90.0	11.265087
91.0	11.265184
92.0	11.26527
93.0	11.265348
94.0	11.265419
95.0	11.265482
96.0	11.26554
97.0	11.265591
98.0	11.265638
99.0	11.26568
100.0	11.265717