## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Pl3-CRR995023.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Pl3-CRR995023.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Pl3-CRR995023.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18047659	0	0	4807393	3765119	0.266372	93037479

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.239031
2.0	2.259586
3.0	3.100189
4.0	3.79257
5.0	4.362865
6.0	4.832601
7.0	5.21951
8.0	5.538196
9.0	5.800688
10.0	6.016896
11.0	6.194981
12.0	6.341664
13.0	6.462483
14.0	6.561998
15.0	6.643966
16.0	6.711481
17.0	6.767091
18.0	6.812895
19.0	6.850623
20.0	6.881698
21.0	6.907294
22.0	6.928377
23.0	6.945742
24.0	6.960045
25.0	6.971826
26.0	6.98153
27.0	6.989523
28.0	6.996106
29.0	7.001529
30.0	7.005995
31.0	7.009674
32.0	7.012704
33.0	7.0152
34.0	7.017256
35.0	7.018949
36.0	7.020344
37.0	7.021492
38.0	7.022439
39.0	7.023218
40.0	7.02386
41.0	7.024389
42.0	7.024824
43.0	7.025183
44.0	7.025479
45.0	7.025722
46.0	7.025922
47.0	7.026087
48.0	7.026223
49.0	7.026335
50.0	7.026428
51.0	7.026504
52.0	7.026566
53.0	7.026618
54.0	7.02666
55.0	7.026695
56.0	7.026724
57.0	7.026748
58.0	7.026767
59.0	7.026784
60.0	7.026797
61.0	7.026808
62.0	7.026817
63.0	7.026824
64.0	7.02683
65.0	7.026835
66.0	7.026839
67.0	7.026843
68.0	7.026846
69.0	7.026848
70.0	7.02685
71.0	7.026851
72.0	7.026853
73.0	7.026854
74.0	7.026855
75.0	7.026855
76.0	7.026856
77.0	7.026856
78.0	7.026857
79.0	7.026857
80.0	7.026857
81.0	7.026858
82.0	7.026858
83.0	7.026858
84.0	7.026858
85.0	7.026858
86.0	7.026858
87.0	7.026858
88.0	7.026858
89.0	7.026859
90.0	7.026859
91.0	7.026859
92.0	7.026859
93.0	7.026859
94.0	7.026859
95.0	7.026859
96.0	7.026859
97.0	7.026859
98.0	7.026859
99.0	7.026859
100.0	7.026859