## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Pl2-CRR995022.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Pl2-CRR995022.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Pl2-CRR995022.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14493763	0	0	3246026	2582432	0.22396	102894120

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.201953
2.0	2.245981
3.0	3.152835
4.0	3.940537
5.0	4.624743
6.0	5.219051
7.0	5.735273
8.0	6.183669
9.0	6.57315
10.0	6.911457
11.0	7.205314
12.0	7.460562
13.0	7.682272
14.0	7.874852
15.0	8.042129
16.0	8.187427
17.0	8.313634
18.0	8.42326
19.0	8.518481
20.0	8.601191
21.0	8.673034
22.0	8.735438
23.0	8.789642
24.0	8.836725
25.0	8.877621
26.0	8.913144
27.0	8.944
28.0	8.970801
29.0	8.994081
30.0	9.014303
31.0	9.031867
32.0	9.047124
33.0	9.060376
34.0	9.071887
35.0	9.081885
36.0	9.09057
37.0	9.098113
38.0	9.104666
39.0	9.110358
40.0	9.115301
41.0	9.119595
42.0	9.123325
43.0	9.126565
44.0	9.12938
45.0	9.131824
46.0	9.133947
47.0	9.135792
48.0	9.137394
49.0	9.138785
50.0	9.139994
51.0	9.141044
52.0	9.141956
53.0	9.142748
54.0	9.143436
55.0	9.144033
56.0	9.144552
57.0	9.145003
58.0	9.145395
59.0	9.145735
60.0	9.146031
61.0	9.146287
62.0	9.14651
63.0	9.146704
64.0	9.146872
65.0	9.147018
66.0	9.147145
67.0	9.147255
68.0	9.147351
69.0	9.147434
70.0	9.147507
71.0	9.147569
72.0	9.147624
73.0	9.147671
74.0	9.147712
75.0	9.147748
76.0	9.147779
77.0	9.147806
78.0	9.147829
79.0	9.14785
80.0	9.147867
81.0	9.147883
82.0	9.147896
83.0	9.147908
84.0	9.147918
85.0	9.147926
86.0	9.147934
87.0	9.147941
88.0	9.147946
89.0	9.147951
90.0	9.147956
91.0	9.147959
92.0	9.147963
93.0	9.147965
94.0	9.147968
95.0	9.14797
96.0	9.147972
97.0	9.147974
98.0	9.147975
99.0	9.147976
100.0	9.147977