## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Pl1-CRR995021.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Pl1-CRR995021.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Pl1-CRR995021.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15491969	0	0	3613121	2893955	0.233225	106102505

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.213424
2.0	2.262003
3.0	3.168133
4.0	3.951164
5.0	4.62782
6.0	5.212552
7.0	5.717848
8.0	6.154499
9.0	6.531831
10.0	6.857903
11.0	7.139677
12.0	7.383172
13.0	7.593588
14.0	7.77542
15.0	7.932549
16.0	8.068332
17.0	8.185669
18.0	8.287066
19.0	8.374688
20.0	8.450406
21.0	8.515838
22.0	8.572381
23.0	8.621243
24.0	8.663466
25.0	8.699954
26.0	8.731485
27.0	8.758732
28.0	8.782278
29.0	8.802625
30.0	8.820208
31.0	8.835402
32.0	8.848532
33.0	8.859879
34.0	8.869684
35.0	8.878157
36.0	8.885479
37.0	8.891806
38.0	8.897273
39.0	8.901998
40.0	8.906081
41.0	8.90961
42.0	8.912659
43.0	8.915293
44.0	8.91757
45.0	8.919538
46.0	8.921238
47.0	8.922707
48.0	8.923977
49.0	8.925074
50.0	8.926022
51.0	8.926842
52.0	8.92755
53.0	8.928162
54.0	8.92869
55.0	8.929147
56.0	8.929542
57.0	8.929883
58.0	8.930178
59.0	8.930433
60.0	8.930653
61.0	8.930843
62.0	8.931008
63.0	8.93115
64.0	8.931272
65.0	8.931379
66.0	8.93147
67.0	8.931549
68.0	8.931618
69.0	8.931677
70.0	8.931728
71.0	8.931772
72.0	8.931811
73.0	8.931844
74.0	8.931872
75.0	8.931897
76.0	8.931918
77.0	8.931936
78.0	8.931952
79.0	8.931966
80.0	8.931978
81.0	8.931988
82.0	8.931997
83.0	8.932005
84.0	8.932011
85.0	8.932017
86.0	8.932022
87.0	8.932026
88.0	8.93203
89.0	8.932033
90.0	8.932036
91.0	8.932038
92.0	8.93204
93.0	8.932042
94.0	8.932044
95.0	8.932045
96.0	8.932046
97.0	8.932047
98.0	8.932048
99.0	8.932049
100.0	8.932049