## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Mu3-CRR995020.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Mu3-CRR995020.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Mu3-CRR995020.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17889548	0	0	4576763	3600664	0.255834	99766548

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.230197
2.0	2.258448
3.0	3.117906
4.0	3.836278
5.0	4.436724
6.0	4.938603
7.0	5.358095
8.0	5.708725
9.0	6.001796
10.0	6.246758
11.0	6.451508
12.0	6.622646
13.0	6.765691
14.0	6.885255
15.0	6.985191
16.0	7.068722
17.0	7.138541
18.0	7.196898
19.0	7.245676
20.0	7.286447
21.0	7.320525
22.0	7.349009
23.0	7.372816
24.0	7.392716
25.0	7.409349
26.0	7.423252
27.0	7.434872
28.0	7.444585
29.0	7.452703
30.0	7.459489
31.0	7.465161
32.0	7.469902
33.0	7.473864
34.0	7.477176
35.0	7.479945
36.0	7.482259
37.0	7.484193
38.0	7.485809
39.0	7.48716
40.0	7.48829
41.0	7.489234
42.0	7.490023
43.0	7.490682
44.0	7.491234
45.0	7.491694
46.0	7.492079
47.0	7.492401
48.0	7.49267
49.0	7.492895
50.0	7.493083
51.0	7.49324
52.0	7.493372
53.0	7.493481
54.0	7.493573
55.0	7.49365
56.0	7.493714
57.0	7.493768
58.0	7.493812
59.0	7.49385
60.0	7.493881
61.0	7.493907
62.0	7.493929
63.0	7.493947
64.0	7.493963
65.0	7.493975
66.0	7.493986
67.0	7.493995
68.0	7.494002
69.0	7.494009
70.0	7.494014
71.0	7.494018
72.0	7.494022
73.0	7.494025
74.0	7.494027
75.0	7.49403
76.0	7.494031
77.0	7.494033
78.0	7.494034
79.0	7.494035
80.0	7.494036
81.0	7.494037
82.0	7.494037
83.0	7.494038
84.0	7.494038
85.0	7.494039
86.0	7.494039
87.0	7.494039
88.0	7.494039
89.0	7.494039
90.0	7.49404
91.0	7.49404
92.0	7.49404
93.0	7.49404
94.0	7.49404
95.0	7.49404
96.0	7.49404
97.0	7.49404
98.0	7.49404
99.0	7.49404
100.0	7.49404