## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Mu2-CRR995019.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Mu2-CRR995019.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Mu2-CRR995019.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17356566	0	0	4856685	2932450	0.279818	49138478

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.169804
2.0	1.991503
3.0	2.568684
4.0	2.97411
5.0	3.258892
6.0	3.458929
7.0	3.59944
8.0	3.698139
9.0	3.767467
10.0	3.816165
11.0	3.850371
12.0	3.874399
13.0	3.891276
14.0	3.903132
15.0	3.911459
16.0	3.917308
17.0	3.921417
18.0	3.924303
19.0	3.92633
20.0	3.927754
21.0	3.928755
22.0	3.929457
23.0	3.929951
24.0	3.930297
25.0	3.930541
26.0	3.930712
27.0	3.930832
28.0	3.930916
29.0	3.930976
30.0	3.931017
31.0	3.931047
32.0	3.931067
33.0	3.931082
34.0	3.931092
35.0	3.931099
36.0	3.931104
37.0	3.931107
38.0	3.93111
39.0	3.931112
40.0	3.931113
41.0	3.931114
42.0	3.931114
43.0	3.931115
44.0	3.931115
45.0	3.931115
46.0	3.931115
47.0	3.931115
48.0	3.931115
49.0	3.931116
50.0	3.931116
51.0	3.931116
52.0	3.931116
53.0	3.931116
54.0	3.931116
55.0	3.931116
56.0	3.931116
57.0	3.931116
58.0	3.931116
59.0	3.931116
60.0	3.931116
61.0	3.931116
62.0	3.931116
63.0	3.931116
64.0	3.931116
65.0	3.931116
66.0	3.931116
67.0	3.931116
68.0	3.931116
69.0	3.931116
70.0	3.931116
71.0	3.931116
72.0	3.931116
73.0	3.931116
74.0	3.931116
75.0	3.931116
76.0	3.931116
77.0	3.931116
78.0	3.931116
79.0	3.931116
80.0	3.931116
81.0	3.931116
82.0	3.931116
83.0	3.931116
84.0	3.931116
85.0	3.931116
86.0	3.931116
87.0	3.931116
88.0	3.931116
89.0	3.931116
90.0	3.931116
91.0	3.931116
92.0	3.931116
93.0	3.931116
94.0	3.931116
95.0	3.931116
96.0	3.931116
97.0	3.931116
98.0	3.931116
99.0	3.931116
100.0	3.931116