## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Mu1-CRR995018.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Mu1-CRR995018.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Mu1-CRR995018.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	21860050	0	0	5297425	3367463	0.242334	82318670

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.159132
2.0	2.047933
3.0	2.729448
4.0	3.252022
5.0	3.652721
6.0	3.959969
7.0	4.195562
8.0	4.37621
9.0	4.514727
10.0	4.620939
11.0	4.702381
12.0	4.764829
13.0	4.812713
14.0	4.849429
15.0	4.877583
16.0	4.89917
17.0	4.915723
18.0	4.928416
19.0	4.938148
20.0	4.945611
21.0	4.951333
22.0	4.955721
23.0	4.959085
24.0	4.961665
25.0	4.963643
26.0	4.96516
27.0	4.966323
28.0	4.967214
29.0	4.967898
30.0	4.968422
31.0	4.968824
32.0	4.969133
33.0	4.969369
34.0	4.96955
35.0	4.969689
36.0	4.969796
37.0	4.969878
38.0	4.96994
39.0	4.969988
40.0	4.970025
41.0	4.970053
42.0	4.970075
43.0	4.970092
44.0	4.970104
45.0	4.970114
46.0	4.970122
47.0	4.970127
48.0	4.970132
49.0	4.970135
50.0	4.970138
51.0	4.97014
52.0	4.970141
53.0	4.970143
54.0	4.970143
55.0	4.970144
56.0	4.970145
57.0	4.970145
58.0	4.970145
59.0	4.970146
60.0	4.970146
61.0	4.970146
62.0	4.970146
63.0	4.970146
64.0	4.970146
65.0	4.970146
66.0	4.970146
67.0	4.970146
68.0	4.970146
69.0	4.970146
70.0	4.970146
71.0	4.970146
72.0	4.970146
73.0	4.970146
74.0	4.970146
75.0	4.970146
76.0	4.970146
77.0	4.970146
78.0	4.970146
79.0	4.970146
80.0	4.970146
81.0	4.970146
82.0	4.970146
83.0	4.970146
84.0	4.970146
85.0	4.970146
86.0	4.970146
87.0	4.970146
88.0	4.970146
89.0	4.970146
90.0	4.970146
91.0	4.970146
92.0	4.970146
93.0	4.970146
94.0	4.970146
95.0	4.970146
96.0	4.970146
97.0	4.970146
98.0	4.970146
99.0	4.970146
100.0	4.970146