## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Li3-CRR995017.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Li3-CRR995017.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Li3-CRR995017.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	29798000	0	0	15175465	9762851	0.509278	30048526

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.292645
2.0	1.772163
3.0	1.950045
4.0	2.016032
5.0	2.040511
6.0	2.049591
7.0	2.05296
8.0	2.05421
9.0	2.054673
10.0	2.054845
11.0	2.054909
12.0	2.054932
13.0	2.054941
14.0	2.054945
15.0	2.054946
16.0	2.054946
17.0	2.054946
18.0	2.054946
19.0	2.054946
20.0	2.054946
21.0	2.054946
22.0	2.054946
23.0	2.054946
24.0	2.054946
25.0	2.054946
26.0	2.054946
27.0	2.054946
28.0	2.054946
29.0	2.054946
30.0	2.054946
31.0	2.054946
32.0	2.054946
33.0	2.054946
34.0	2.054946
35.0	2.054946
36.0	2.054946
37.0	2.054946
38.0	2.054946
39.0	2.054946
40.0	2.054946
41.0	2.054946
42.0	2.054946
43.0	2.054946
44.0	2.054946
45.0	2.054946
46.0	2.054946
47.0	2.054946
48.0	2.054946
49.0	2.054946
50.0	2.054946
51.0	2.054946
52.0	2.054946
53.0	2.054946
54.0	2.054946
55.0	2.054946
56.0	2.054946
57.0	2.054946
58.0	2.054946
59.0	2.054946
60.0	2.054946
61.0	2.054946
62.0	2.054946
63.0	2.054946
64.0	2.054946
65.0	2.054946
66.0	2.054946
67.0	2.054946
68.0	2.054946
69.0	2.054946
70.0	2.054946
71.0	2.054946
72.0	2.054946
73.0	2.054946
74.0	2.054946
75.0	2.054946
76.0	2.054946
77.0	2.054946
78.0	2.054946
79.0	2.054946
80.0	2.054946
81.0	2.054946
82.0	2.054946
83.0	2.054946
84.0	2.054946
85.0	2.054946
86.0	2.054946
87.0	2.054946
88.0	2.054946
89.0	2.054946
90.0	2.054946
91.0	2.054946
92.0	2.054946
93.0	2.054946
94.0	2.054946
95.0	2.054946
96.0	2.054946
97.0	2.054946
98.0	2.054946
99.0	2.054946
100.0	2.054946