## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Li2-CRR995016.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Li2-CRR995016.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Li2-CRR995016.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19106551	0	0	6312623	4350829	0.330391	50456863

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.243205
2.0	2.094515
3.0	2.677468
4.0	3.076657
5.0	3.35001
6.0	3.537194
7.0	3.665372
8.0	3.753145
9.0	3.813249
10.0	3.854407
11.0	3.88259
12.0	3.90189
13.0	3.915105
14.0	3.924155
15.0	3.930352
16.0	3.934595
17.0	3.937501
18.0	3.939491
19.0	3.940853
20.0	3.941786
21.0	3.942425
22.0	3.942863
23.0	3.943162
24.0	3.943368
25.0	3.943508
26.0	3.943604
27.0	3.94367
28.0	3.943715
29.0	3.943746
30.0	3.943767
31.0	3.943782
32.0	3.943792
33.0	3.943799
34.0	3.943803
35.0	3.943806
36.0	3.943809
37.0	3.94381
38.0	3.943811
39.0	3.943812
40.0	3.943812
41.0	3.943813
42.0	3.943813
43.0	3.943813
44.0	3.943813
45.0	3.943813
46.0	3.943813
47.0	3.943813
48.0	3.943813
49.0	3.943813
50.0	3.943813
51.0	3.943813
52.0	3.943813
53.0	3.943813
54.0	3.943813
55.0	3.943813
56.0	3.943813
57.0	3.943813
58.0	3.943813
59.0	3.943813
60.0	3.943813
61.0	3.943813
62.0	3.943813
63.0	3.943813
64.0	3.943813
65.0	3.943813
66.0	3.943813
67.0	3.943813
68.0	3.943813
69.0	3.943813
70.0	3.943813
71.0	3.943813
72.0	3.943813
73.0	3.943813
74.0	3.943813
75.0	3.943813
76.0	3.943813
77.0	3.943813
78.0	3.943813
79.0	3.943813
80.0	3.943813
81.0	3.943813
82.0	3.943813
83.0	3.943813
84.0	3.943813
85.0	3.943813
86.0	3.943813
87.0	3.943813
88.0	3.943813
89.0	3.943813
90.0	3.943813
91.0	3.943813
92.0	3.943813
93.0	3.943813
94.0	3.943813
95.0	3.943813
96.0	3.943813
97.0	3.943813
98.0	3.943813
99.0	3.943813
100.0	3.943813