## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Br3-CRR995015.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Br3-CRR995015.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Br3-CRR995015.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19050857	0	0	6289238	3894786	0.330129	42768805

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.204669
2.0	1.976311
3.0	2.470582
4.0	2.787184
5.0	2.989982
6.0	3.119882
7.0	3.203089
8.0	3.256387
9.0	3.290526
10.0	3.312394
11.0	3.326401
12.0	3.335374
13.0	3.341121
14.0	3.344802
15.0	3.34716
16.0	3.34867
17.0	3.349638
18.0	3.350258
19.0	3.350655
20.0	3.350909
21.0	3.351072
22.0	3.351176
23.0	3.351243
24.0	3.351286
25.0	3.351313
26.0	3.351331
27.0	3.351342
28.0	3.351349
29.0	3.351354
30.0	3.351357
31.0	3.351359
32.0	3.35136
33.0	3.351361
34.0	3.351361
35.0	3.351361
36.0	3.351362
37.0	3.351362
38.0	3.351362
39.0	3.351362
40.0	3.351362
41.0	3.351362
42.0	3.351362
43.0	3.351362
44.0	3.351362
45.0	3.351362
46.0	3.351362
47.0	3.351362
48.0	3.351362
49.0	3.351362
50.0	3.351362
51.0	3.351362
52.0	3.351362
53.0	3.351362
54.0	3.351362
55.0	3.351362
56.0	3.351362
57.0	3.351362
58.0	3.351362
59.0	3.351362
60.0	3.351362
61.0	3.351362
62.0	3.351362
63.0	3.351362
64.0	3.351362
65.0	3.351362
66.0	3.351362
67.0	3.351362
68.0	3.351362
69.0	3.351362
70.0	3.351362
71.0	3.351362
72.0	3.351362
73.0	3.351362
74.0	3.351362
75.0	3.351362
76.0	3.351362
77.0	3.351362
78.0	3.351362
79.0	3.351362
80.0	3.351362
81.0	3.351362
82.0	3.351362
83.0	3.351362
84.0	3.351362
85.0	3.351362
86.0	3.351362
87.0	3.351362
88.0	3.351362
89.0	3.351362
90.0	3.351362
91.0	3.351362
92.0	3.351362
93.0	3.351362
94.0	3.351362
95.0	3.351362
96.0	3.351362
97.0	3.351362
98.0	3.351362
99.0	3.351362
100.0	3.351362