## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS40_Br1-CRR995013.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS40_Br1-CRR995013.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS40_Br1-CRR995013.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:20 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19734229	0	0	8277935	5084306	0.419471	28516371

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.243183
2.0	1.865468
3.0	2.176958
4.0	2.332877
5.0	2.410924
6.0	2.44999
7.0	2.469546
8.0	2.479334
9.0	2.484234
10.0	2.486686
11.0	2.487914
12.0	2.488529
13.0	2.488836
14.0	2.48899
15.0	2.489067
16.0	2.489106
17.0	2.489125
18.0	2.489135
19.0	2.48914
20.0	2.489142
21.0	2.489143
22.0	2.489144
23.0	2.489144
24.0	2.489144
25.0	2.489144
26.0	2.489144
27.0	2.489144
28.0	2.489144
29.0	2.489144
30.0	2.489144
31.0	2.489144
32.0	2.489144
33.0	2.489144
34.0	2.489144
35.0	2.489144
36.0	2.489144
37.0	2.489144
38.0	2.489144
39.0	2.489144
40.0	2.489144
41.0	2.489144
42.0	2.489144
43.0	2.489144
44.0	2.489144
45.0	2.489144
46.0	2.489144
47.0	2.489144
48.0	2.489144
49.0	2.489144
50.0	2.489144
51.0	2.489144
52.0	2.489144
53.0	2.489144
54.0	2.489144
55.0	2.489144
56.0	2.489144
57.0	2.489144
58.0	2.489144
59.0	2.489144
60.0	2.489144
61.0	2.489144
62.0	2.489144
63.0	2.489144
64.0	2.489144
65.0	2.489144
66.0	2.489144
67.0	2.489144
68.0	2.489144
69.0	2.489144
70.0	2.489144
71.0	2.489144
72.0	2.489144
73.0	2.489144
74.0	2.489144
75.0	2.489144
76.0	2.489144
77.0	2.489144
78.0	2.489144
79.0	2.489144
80.0	2.489144
81.0	2.489144
82.0	2.489144
83.0	2.489144
84.0	2.489144
85.0	2.489144
86.0	2.489144
87.0	2.489144
88.0	2.489144
89.0	2.489144
90.0	2.489144
91.0	2.489144
92.0	2.489144
93.0	2.489144
94.0	2.489144
95.0	2.489144
96.0	2.489144
97.0	2.489144
98.0	2.489144
99.0	2.489144
100.0	2.489144