## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS168_O_Li3-CRR995011.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS168_O_Li3-CRR995011.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS168_O_Li3-CRR995011.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:12:21 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19437033	0	0	3215164	1891200	0.165414	110337794

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.098596
2.0	2.019751
3.0	2.792126
4.0	3.43975
5.0	3.982772
6.0	4.438088
7.0	4.819863
8.0	5.139976
9.0	5.408385
10.0	5.633443
11.0	5.822149
12.0	5.980377
13.0	6.113049
14.0	6.224292
15.0	6.317567
16.0	6.395777
17.0	6.461355
18.0	6.516341
19.0	6.562446
20.0	6.601104
21.0	6.633519
22.0	6.660698
23.0	6.683487
24.0	6.702595
25.0	6.718617
26.0	6.732051
27.0	6.743316
28.0	6.752761
29.0	6.76068
30.0	6.76732
31.0	6.772888
32.0	6.777557
33.0	6.781471
34.0	6.784754
35.0	6.787506
36.0	6.789813
37.0	6.791748
38.0	6.793371
39.0	6.794731
40.0	6.795872
41.0	6.796828
42.0	6.79763
43.0	6.798302
44.0	6.798866
45.0	6.799339
46.0	6.799735
47.0	6.800068
48.0	6.800346
49.0	6.80058
50.0	6.800776
51.0	6.80094
52.0	6.801078
53.0	6.801193
54.0	6.80129
55.0	6.801371
56.0	6.801439
57.0	6.801497
58.0	6.801544
59.0	6.801585
60.0	6.801618
61.0	6.801646
62.0	6.80167
63.0	6.80169
64.0	6.801707
65.0	6.801721
66.0	6.801732
67.0	6.801742
68.0	6.80175
69.0	6.801757
70.0	6.801763
71.0	6.801768
72.0	6.801772
73.0	6.801775
74.0	6.801778
75.0	6.80178
76.0	6.801783
77.0	6.801784
78.0	6.801786
79.0	6.801787
80.0	6.801788
81.0	6.801789
82.0	6.801789
83.0	6.80179
84.0	6.80179
85.0	6.801791
86.0	6.801791
87.0	6.801791
88.0	6.801792
89.0	6.801792
90.0	6.801792
91.0	6.801792
92.0	6.801792
93.0	6.801792
94.0	6.801792
95.0	6.801793
96.0	6.801793
97.0	6.801793
98.0	6.801793
99.0	6.801793
100.0	6.801793