## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS115_Mu3-CRR995003.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS115_Mu3-CRR995003.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS115_Mu3-CRR995003.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:36 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20049573	0	0	9774942	6050571	0.487539	21400314

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.266678
2.0	1.763023
3.0	1.957515
4.0	2.033726
5.0	2.063589
6.0	2.075291
7.0	2.079876
8.0	2.081673
9.0	2.082377
10.0	2.082653
11.0	2.082761
12.0	2.082803
13.0	2.08282
14.0	2.082826
15.0	2.082829
16.0	2.08283
17.0	2.08283
18.0	2.08283
19.0	2.08283
20.0	2.08283
21.0	2.08283
22.0	2.08283
23.0	2.08283
24.0	2.08283
25.0	2.08283
26.0	2.08283
27.0	2.08283
28.0	2.08283
29.0	2.08283
30.0	2.08283
31.0	2.08283
32.0	2.08283
33.0	2.08283
34.0	2.08283
35.0	2.08283
36.0	2.08283
37.0	2.08283
38.0	2.08283
39.0	2.08283
40.0	2.08283
41.0	2.08283
42.0	2.08283
43.0	2.08283
44.0	2.08283
45.0	2.08283
46.0	2.08283
47.0	2.08283
48.0	2.08283
49.0	2.08283
50.0	2.08283
51.0	2.08283
52.0	2.08283
53.0	2.08283
54.0	2.08283
55.0	2.08283
56.0	2.08283
57.0	2.08283
58.0	2.08283
59.0	2.08283
60.0	2.08283
61.0	2.08283
62.0	2.08283
63.0	2.08283
64.0	2.08283
65.0	2.08283
66.0	2.08283
67.0	2.08283
68.0	2.08283
69.0	2.08283
70.0	2.08283
71.0	2.08283
72.0	2.08283
73.0	2.08283
74.0	2.08283
75.0	2.08283
76.0	2.08283
77.0	2.08283
78.0	2.08283
79.0	2.08283
80.0	2.08283
81.0	2.08283
82.0	2.08283
83.0	2.08283
84.0	2.08283
85.0	2.08283
86.0	2.08283
87.0	2.08283
88.0	2.08283
89.0	2.08283
90.0	2.08283
91.0	2.08283
92.0	2.08283
93.0	2.08283
94.0	2.08283
95.0	2.08283
96.0	2.08283
97.0	2.08283
98.0	2.08283
99.0	2.08283
100.0	2.08283