## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DS115_Li2-CRR994999.2x36mers.noMT.bwa.unique.bam] OUTPUT=DS115_Li2-CRR994999.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DS115_Li2-CRR994999.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:36 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17795628	0	0	5175950	3366438	0.290855	52612141

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.196424
2.0	2.049501
3.0	2.657765
4.0	3.091471
5.0	3.400713
6.0	3.62121
7.0	3.778429
8.0	3.89053
9.0	3.970461
10.0	4.027453
11.0	4.06809
12.0	4.097065
13.0	4.117724
14.0	4.132455
15.0	4.142959
16.0	4.150448
17.0	4.155788
18.0	4.159596
19.0	4.16231
20.0	4.164246
21.0	4.165626
22.0	4.166611
23.0	4.167312
24.0	4.167813
25.0	4.168169
26.0	4.168424
27.0	4.168605
28.0	4.168734
29.0	4.168827
30.0	4.168892
31.0	4.168939
32.0	4.168973
33.0	4.168997
34.0	4.169014
35.0	4.169026
36.0	4.169034
37.0	4.16904
38.0	4.169045
39.0	4.169048
40.0	4.16905
41.0	4.169052
42.0	4.169053
43.0	4.169054
44.0	4.169054
45.0	4.169055
46.0	4.169055
47.0	4.169055
48.0	4.169055
49.0	4.169055
50.0	4.169056
51.0	4.169056
52.0	4.169056
53.0	4.169056
54.0	4.169056
55.0	4.169056
56.0	4.169056
57.0	4.169056
58.0	4.169056
59.0	4.169056
60.0	4.169056
61.0	4.169056
62.0	4.169056
63.0	4.169056
64.0	4.169056
65.0	4.169056
66.0	4.169056
67.0	4.169056
68.0	4.169056
69.0	4.169056
70.0	4.169056
71.0	4.169056
72.0	4.169056
73.0	4.169056
74.0	4.169056
75.0	4.169056
76.0	4.169056
77.0	4.169056
78.0	4.169056
79.0	4.169056
80.0	4.169056
81.0	4.169056
82.0	4.169056
83.0	4.169056
84.0	4.169056
85.0	4.169056
86.0	4.169056
87.0	4.169056
88.0	4.169056
89.0	4.169056
90.0	4.169056
91.0	4.169056
92.0	4.169056
93.0	4.169056
94.0	4.169056
95.0	4.169056
96.0	4.169056
97.0	4.169056
98.0	4.169056
99.0	4.169056
100.0	4.169056