## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DB40_Pl2-CRR994983.2x36mers.noMT.bwa.unique.bam] OUTPUT=DB40_Pl2-CRR994983.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DB40_Pl2-CRR994983.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:33 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15837185	0	0	7834891	5425238	0.494715	18870534

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.339347
2.0	1.917989
3.0	2.167981
4.0	2.275985
5.0	2.322647
6.0	2.342806
7.0	2.351516
8.0	2.355278
9.0	2.356904
10.0	2.357606
11.0	2.35791
12.0	2.358041
13.0	2.358097
14.0	2.358122
15.0	2.358133
16.0	2.358137
17.0	2.358139
18.0	2.35814
19.0	2.35814
20.0	2.35814
21.0	2.358141
22.0	2.358141
23.0	2.358141
24.0	2.358141
25.0	2.358141
26.0	2.358141
27.0	2.358141
28.0	2.358141
29.0	2.358141
30.0	2.358141
31.0	2.358141
32.0	2.358141
33.0	2.358141
34.0	2.358141
35.0	2.358141
36.0	2.358141
37.0	2.358141
38.0	2.358141
39.0	2.358141
40.0	2.358141
41.0	2.358141
42.0	2.358141
43.0	2.358141
44.0	2.358141
45.0	2.358141
46.0	2.358141
47.0	2.358141
48.0	2.358141
49.0	2.358141
50.0	2.358141
51.0	2.358141
52.0	2.358141
53.0	2.358141
54.0	2.358141
55.0	2.358141
56.0	2.358141
57.0	2.358141
58.0	2.358141
59.0	2.358141
60.0	2.358141
61.0	2.358141
62.0	2.358141
63.0	2.358141
64.0	2.358141
65.0	2.358141
66.0	2.358141
67.0	2.358141
68.0	2.358141
69.0	2.358141
70.0	2.358141
71.0	2.358141
72.0	2.358141
73.0	2.358141
74.0	2.358141
75.0	2.358141
76.0	2.358141
77.0	2.358141
78.0	2.358141
79.0	2.358141
80.0	2.358141
81.0	2.358141
82.0	2.358141
83.0	2.358141
84.0	2.358141
85.0	2.358141
86.0	2.358141
87.0	2.358141
88.0	2.358141
89.0	2.358141
90.0	2.358141
91.0	2.358141
92.0	2.358141
93.0	2.358141
94.0	2.358141
95.0	2.358141
96.0	2.358141
97.0	2.358141
98.0	2.358141
99.0	2.358141
100.0	2.358141