## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DB40_Mu2-CRR994980.2x36mers.noMT.bwa.unique.bam] OUTPUT=DB40_Mu2-CRR994980.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DB40_Mu2-CRR994980.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:31 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17465414	0	0	4843463	4103167	0.277317	116096942

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.284679
2.0	2.389928
3.0	3.340808
4.0	4.158879
5.0	4.862691
6.0	5.468203
7.0	5.989143
8.0	6.437323
9.0	6.822907
10.0	7.154637
11.0	7.440034
12.0	7.68557
13.0	7.896813
14.0	8.078551
15.0	8.234906
16.0	8.369423
17.0	8.485152
18.0	8.584718
19.0	8.670377
20.0	8.744072
21.0	8.807474
22.0	8.862021
23.0	8.90895
24.0	8.949324
25.0	8.984059
26.0	9.013942
27.0	9.039652
28.0	9.061771
29.0	9.080801
30.0	9.097172
31.0	9.111258
32.0	9.123375
33.0	9.133801
34.0	9.14277
35.0	9.150487
36.0	9.157125
37.0	9.162837
38.0	9.167751
39.0	9.171978
40.0	9.175615
41.0	9.178744
42.0	9.181436
43.0	9.183752
44.0	9.185745
45.0	9.187459
46.0	9.188934
47.0	9.190203
48.0	9.191295
49.0	9.192234
50.0	9.193042
51.0	9.193737
52.0	9.194335
53.0	9.194849
54.0	9.195292
55.0	9.195673
56.0	9.196001
57.0	9.196282
58.0	9.196525
59.0	9.196734
60.0	9.196913
61.0	9.197068
62.0	9.1972
63.0	9.197315
64.0	9.197413
65.0	9.197498
66.0	9.19757
67.0	9.197633
68.0	9.197687
69.0	9.197733
70.0	9.197773
71.0	9.197807
72.0	9.197837
73.0	9.197862
74.0	9.197884
75.0	9.197903
76.0	9.197919
77.0	9.197933
78.0	9.197945
79.0	9.197955
80.0	9.197964
81.0	9.197972
82.0	9.197978
83.0	9.197984
84.0	9.197989
85.0	9.197993
86.0	9.197997
87.0	9.198
88.0	9.198002
89.0	9.198005
90.0	9.198007
91.0	9.198008
92.0	9.19801
93.0	9.198011
94.0	9.198012
95.0	9.198013
96.0	9.198014
97.0	9.198015
98.0	9.198015
99.0	9.198016
100.0	9.198016