## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DB40_Li2-CRR994977.2x36mers.noMT.bwa.unique.bam] OUTPUT=DB40_Li2-CRR994977.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DB40_Li2-CRR994977.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:31 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20113252	0	0	9448325	6362020	0.469756	25855334

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.310685
2.0	1.912764
3.0	2.189337
4.0	2.316385
5.0	2.374746
6.0	2.401554
7.0	2.413869
8.0	2.419526
9.0	2.422125
10.0	2.423319
11.0	2.423867
12.0	2.424119
13.0	2.424235
14.0	2.424288
15.0	2.424312
16.0	2.424323
17.0	2.424329
18.0	2.424331
19.0	2.424332
20.0	2.424333
21.0	2.424333
22.0	2.424333
23.0	2.424333
24.0	2.424333
25.0	2.424333
26.0	2.424333
27.0	2.424333
28.0	2.424333
29.0	2.424333
30.0	2.424333
31.0	2.424333
32.0	2.424333
33.0	2.424333
34.0	2.424333
35.0	2.424333
36.0	2.424333
37.0	2.424333
38.0	2.424333
39.0	2.424333
40.0	2.424333
41.0	2.424333
42.0	2.424333
43.0	2.424333
44.0	2.424333
45.0	2.424333
46.0	2.424333
47.0	2.424333
48.0	2.424333
49.0	2.424333
50.0	2.424333
51.0	2.424333
52.0	2.424333
53.0	2.424333
54.0	2.424333
55.0	2.424333
56.0	2.424333
57.0	2.424333
58.0	2.424333
59.0	2.424333
60.0	2.424333
61.0	2.424333
62.0	2.424333
63.0	2.424333
64.0	2.424333
65.0	2.424333
66.0	2.424333
67.0	2.424333
68.0	2.424333
69.0	2.424333
70.0	2.424333
71.0	2.424333
72.0	2.424333
73.0	2.424333
74.0	2.424333
75.0	2.424333
76.0	2.424333
77.0	2.424333
78.0	2.424333
79.0	2.424333
80.0	2.424333
81.0	2.424333
82.0	2.424333
83.0	2.424333
84.0	2.424333
85.0	2.424333
86.0	2.424333
87.0	2.424333
88.0	2.424333
89.0	2.424333
90.0	2.424333
91.0	2.424333
92.0	2.424333
93.0	2.424333
94.0	2.424333
95.0	2.424333
96.0	2.424333
97.0	2.424333
98.0	2.424333
99.0	2.424333
100.0	2.424333