## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DB40_Li1-CRR994976.2x36mers.noMT.bwa.unique.bam] OUTPUT=DB40_Li1-CRR994976.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DB40_Li1-CRR994976.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:31 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	23853344	0	0	8906672	4861992	0.373393	38000920

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.185242
2.0	1.817943
3.0	2.155689
4.0	2.335983
5.0	2.432227
6.0	2.483604
7.0	2.511029
8.0	2.525669
9.0	2.533485
10.0	2.537656
11.0	2.539883
12.0	2.541072
13.0	2.541707
14.0	2.542046
15.0	2.542226
16.0	2.542323
17.0	2.542375
18.0	2.542402
19.0	2.542417
20.0	2.542425
21.0	2.542429
22.0	2.542431
23.0	2.542432
24.0	2.542433
25.0	2.542433
26.0	2.542433
27.0	2.542433
28.0	2.542433
29.0	2.542433
30.0	2.542434
31.0	2.542434
32.0	2.542434
33.0	2.542434
34.0	2.542434
35.0	2.542434
36.0	2.542434
37.0	2.542434
38.0	2.542434
39.0	2.542434
40.0	2.542434
41.0	2.542434
42.0	2.542434
43.0	2.542434
44.0	2.542434
45.0	2.542434
46.0	2.542434
47.0	2.542434
48.0	2.542434
49.0	2.542434
50.0	2.542434
51.0	2.542434
52.0	2.542434
53.0	2.542434
54.0	2.542434
55.0	2.542434
56.0	2.542434
57.0	2.542434
58.0	2.542434
59.0	2.542434
60.0	2.542434
61.0	2.542434
62.0	2.542434
63.0	2.542434
64.0	2.542434
65.0	2.542434
66.0	2.542434
67.0	2.542434
68.0	2.542434
69.0	2.542434
70.0	2.542434
71.0	2.542434
72.0	2.542434
73.0	2.542434
74.0	2.542434
75.0	2.542434
76.0	2.542434
77.0	2.542434
78.0	2.542434
79.0	2.542434
80.0	2.542434
81.0	2.542434
82.0	2.542434
83.0	2.542434
84.0	2.542434
85.0	2.542434
86.0	2.542434
87.0	2.542434
88.0	2.542434
89.0	2.542434
90.0	2.542434
91.0	2.542434
92.0	2.542434
93.0	2.542434
94.0	2.542434
95.0	2.542434
96.0	2.542434
97.0	2.542434
98.0	2.542434
99.0	2.542434
100.0	2.542434