## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[DB40_Br1-CRR994973.2x36mers.noMT.bwa.unique.bam] OUTPUT=DB40_Br1-CRR994973.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=DB40_Br1-CRR994973.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:11:31 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	24390005	0	0	12933305	7558218	0.530271	20379594

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.241336
2.0	1.616423
3.0	1.729761
4.0	1.764007
5.0	1.774356
6.0	1.777482
7.0	1.778427
8.0	1.778713
9.0	1.778799
10.0	1.778825
11.0	1.778833
12.0	1.778835
13.0	1.778836
14.0	1.778836
15.0	1.778836
16.0	1.778836
17.0	1.778836
18.0	1.778836
19.0	1.778836
20.0	1.778836
21.0	1.778836
22.0	1.778836
23.0	1.778836
24.0	1.778836
25.0	1.778836
26.0	1.778836
27.0	1.778836
28.0	1.778836
29.0	1.778836
30.0	1.778836
31.0	1.778836
32.0	1.778836
33.0	1.778836
34.0	1.778836
35.0	1.778836
36.0	1.778836
37.0	1.778836
38.0	1.778836
39.0	1.778836
40.0	1.778836
41.0	1.778836
42.0	1.778836
43.0	1.778836
44.0	1.778836
45.0	1.778836
46.0	1.778836
47.0	1.778836
48.0	1.778836
49.0	1.778836
50.0	1.778836
51.0	1.778836
52.0	1.778836
53.0	1.778836
54.0	1.778836
55.0	1.778836
56.0	1.778836
57.0	1.778836
58.0	1.778836
59.0	1.778836
60.0	1.778836
61.0	1.778836
62.0	1.778836
63.0	1.778836
64.0	1.778836
65.0	1.778836
66.0	1.778836
67.0	1.778836
68.0	1.778836
69.0	1.778836
70.0	1.778836
71.0	1.778836
72.0	1.778836
73.0	1.778836
74.0	1.778836
75.0	1.778836
76.0	1.778836
77.0	1.778836
78.0	1.778836
79.0	1.778836
80.0	1.778836
81.0	1.778836
82.0	1.778836
83.0	1.778836
84.0	1.778836
85.0	1.778836
86.0	1.778836
87.0	1.778836
88.0	1.778836
89.0	1.778836
90.0	1.778836
91.0	1.778836
92.0	1.778836
93.0	1.778836
94.0	1.778836
95.0	1.778836
96.0	1.778836
97.0	1.778836
98.0	1.778836
99.0	1.778836
100.0	1.778836